cluster_sizes: Compute cluster sizes only counting clusters with first...
In emvolz-phylodynamics/variantAnalysis: sarscov2 variant analysis
Description
Usage
Arguments
Value
Description
Compute cluster sizes only counting clusters with first sample occuring within given range and arrange by genotype
Usage
1
cluster_sizes(s, mint = 2020.2, maxt = 2020.35)
Arguments
s
data frame with sequence_name(character), del_introduction(character), sample_time(numeric), genotype (wt or mutant)
mint
lower sample time bound. Clusters must have sample before this time
maxt
upper sample time bound. Clusters must have sample after this time
Value
data frame with cluster sizes, origin time, and genotype
emvolz-phylodynamics/variantAnalysis documentation built on Nov. 13, 2021, 7:16 p.m.
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Description Usage Arguments Value
Description
Compute cluster sizes only counting clusters with first sample occuring within given range and arrange by genotype
Usage
1 | cluster_sizes(s, mint = 2020.2, maxt = 2020.35)
|
Arguments
s |
data frame with sequence_name(character), del_introduction(character), sample_time(numeric), genotype (wt or mutant) |
mint |
lower sample time bound. Clusters must have sample before this time |
maxt |
upper sample time bound. Clusters must have sample after this time |
Value
data frame with cluster sizes, origin time, and genotype
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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