cluster_origin_comparison: Compute cumulative proportion of samples descended from...

In emvolz-phylodynamics/variantAnalysis: sarscov2 variant analysis

Description

Compute cumulative proportion of samples descended from clusters originating within a specified time window

Usage

cluster_origin_comparison(
  s,
  mint = decimal_date(as.Date("2020-08-01")),
  maxt = Inf,
  res = 50
)

Arguments

s	data frame with del_introduction(character), sample_time(numeric)
mint	lower sample time bound. Clusters must have sample before this time
maxt	upper sample time bound. Clusters must have sample after this time
res	integer resolution of time axis

Value

list with 1) result with columns: cumulative fraction of samples descended from new clusters, number descended from old clusters, number descended from new clusters 2) data with cluster subset

emvolz-phylodynamics/variantAnalysis documentation built on Nov. 13, 2021, 7:16 p.m.