Files in emvolz-phylodynamics/variantAnalysis

sarscov2 variant analysis

R/data.R R/frequency0.R R/mcmcsummary.R R/power.R R/power1.R R/read_beast.R R/recurrent_mutations.R R/report_table.R R/sampling.R R/scanner2.R R/scanner_output.R R/scanner_plots.R README.md inst/master_scanner.Rmd inst/stochastic_seir0.R inst/stochastic_seir1.R inst/stochastic_seir2.R man/beast-parser.Rd man/cluster_muts.Rd man/cluster_muts_new.Rd man/cluster_origin_comparison.Rd man/cluster_origin_comparison2.Rd man/cluster_sizes.Rd man/clusterwise_logistic.Rd man/compute_genotypes.Rd man/dedup_data.Rd man/hier_bayes_exponentialGrowth_frequency.Rd man/hier_bayes_pairwiseLogistic_frequency.Rd man/matched_sample.Rd man/matched_sample2.Rd man/mutations_plots.Rd man/plot_maps.Rd man/plpg.Rd man/recurrent_mutations.Rd man/report_table.Rd man/sample_lineage.Rd man/scanner2.Rd man/scanner_output.Rd man/sim_cluster_growth.Rd man/sim_importation_time.Rd man/sim_powerDetectionPrevalence_logisticGrowth.Rd man/sim_replicate.Rd man/sim_replicate2.Rd man/sim_replicate3.Rd man/sim_sampling_cluster.Rd man/variable_frequency_day_report.Rd man/variable_frequency_epiweek.Rd man/variantAnalysis-package.Rd