API for eugeniaeueu/Onassis
OnASSIs Ontology Annotation and Semantic SImilarity software

Global functions
CMdictionary Man page Source code
CMdictionary-class Man page
CMdictionary-method Man page Man page Man page Man page Man page Man page Man page Man page
CMoptions Man page Source code
CMoptions-class Man page
EntityFinder Man page Source code
EntityFinder-class Man page
EntityFinder-method Man page
GEOHandler-function Man page
OnASSiS Man page
OnASSiS-package Man page
Onassis-package Man page
Similarity Man page Source code
Similarity-class Man page
Similarity-constructor Man page
Similarity-method Man page
annotate Man page Source code
annotateDF Man page
annotateDF,EntityFinder,data.frame,character,CMoptions-method Man page
annotateDF,EntityFinder-method Man page
annotateTissueDisease Man page Source code
arguments Man page
arguments,CMoptions-method Man page
arguments<- Man page
arguments<-,CMoptions-method Man page
buildDictionary Man page
buildDictionary, Man page
buildDictionary,CMdictionary,character,character,character,chara Man page
connectToGEODB Man page Source code
connectToGEODB, Man page
connectToSRADB Man page Source code
create_score_matrix Man page Source code
dictInfo Man page
dictInfo, Man page
dictInfo,CMdictionary-method Man page
dictInfo<- Man page
dictInfo<-, Man page
dictInfo<-,CMdictionary-method Man page
dictRef Man page
dictRef, Man page
dictRef,CMdictionary-method Man page
dictRef<- Man page
dictRef<-, Man page
dictRef<-,CMdictionary-method Man page
dictTypes Man page
dictTypes, Man page
dictTypes,CMdictionary-method Man page
dict_location Man page
dict_location, Man page
dict_location,CMdictionary-method Man page
dict_location<- Man page
dict_location<-, Man page
dict_location<-,CMdictionary-method Man page
dictionary Man page Source code
experiment_types Man page Source code
filterTerms Man page Source code
findEntities Man page
findEntities,EntityFinder,character,logical,character,CMoptions, Man page
findEntities,EntityFinder-method Man page
findHealthy Man page Source code
getGEOMetadata Man page Source code
getSRAMetadata Man page Source code
groupConfig Man page Man page
groupConfig,Similarity-method Man page
groupConfig<- Man page Man page
groupConfig<-,Similarity-method Man page
groupsim Man page Man page
groupsim,Similarity,character,character-method Man page
groupwiseConfigRef Man page Man page
groupwiseConfigRef,Similarity-method Man page
groupwiseConfigRef<- Man page Man page
groupwiseConfigRef<-,Similarity-method Man page
icConfig Man page Man page
icConfig,Similarity-method Man page
icConfig<- Man page Man page
icConfig<-,Similarity-method Man page
initJavaLibs Source code
jgc Source code
library_sources Man page Source code
library_strategies Man page Source code
listCombinations Man page
listCombinations,CMoptions-method Man page
loadEntities Source code
multisim Man page Man page
multisim,list,list,character,character-method Man page
onAttach Source code
onLoad Source code
ontology Man page Man page
ontology,Similarity-method Man page
ontology<- Man page Man page
ontology<-,Similarity-method Man page
organism_types Man page Source code
pairwiseConfig Man page Man page
pairwiseConfig,Similarity-method Man page
pairwiseConfig<- Man page Man page
pairwiseConfig<-,Similarity-method Man page
pairwiseConfigRef Man page Man page
pairwiseConfigRef,Similarity-method Man page
pairwiseConfigRef<- Man page Man page
pairwiseConfigRef<-,Similarity-method Man page
paramValueIndex Man page
paramValueIndex,CMoptions-method Man page
paramValueIndex<- Man page
paramValueIndex<-,CMoptions-method Man page
parseLineByLine Source code
prepareEntrezDictionary Source code
samplesim Man page Man page
samplesim,Similarity,character,character,data.frame-method Man page
semanticdifference Man page Source code
show,CMoptions-method Man page
showOpts Man page Man page
showOpts,Similarity-method Man page
showSimilarities Man page Source code
sim Man page Man page
sim, Man page
sim,Similarity,character,character-method Man page
similarity Man page Source code
similarityInstance Man page Man page
similarityInstance,Similarity-method Man page
similarityInstance<- Man page Man page
similarityInstance<-,Similarity-method Man page
typeSystemRef Man page
typeSystemRef, Man page
typeSystemRef,EntityFinder-method Man page
typeSystemRef<- Man page
typeSystemRef<-,EntityFinder-method Man page
eugeniaeueu/Onassis documentation built on Oct. 20, 2017, 4:11 a.m.