API for eugeniaeueu/Onassis
OnASSIs Ontology Annotation and Semantic SImilarity software

Global functions
CMdictionary Man page Source code
CMdictionary-class Man page
CMoptions Man page Source code
CMoptions-class Man page
CaseMatch Man page
CaseMatch,CMoptions-method Man page
CaseMatch<- Man page
CaseMatch<-,CMoptions-method Man page
EntityFinder Man page Source code
EntityFinder-class Man page
FindAllMatches Man page
FindAllMatches,CMoptions-method Man page
FindAllMatches<- Man page
FindAllMatches<-,CMoptions-method Man page
GEOHandler-function Man page
OnASSiS Man page
OnASSiS-package Man page
Onassis Man page Source code
Onassis-class Man page
Onassis-package Man page
OrderIndependentLookup Man page
OrderIndependentLookup,CMoptions-method Man page
OrderIndependentLookup<- Man page
OrderIndependentLookup<-,CMoptions-method Man page
SearchStrategy Man page
SearchStrategy,CMoptions-method Man page
SearchStrategy<- Man page
SearchStrategy<-,CMoptions-method Man page
Similarity Man page Source code
Similarity-class Man page
Stemmer Man page
Stemmer,CMoptions-method Man page
Stemmer<- Man page
Stemmer<-,CMoptions-method Man page
StopWords Man page
StopWords,CMoptions-method Man page
StopWords<- Man page
StopWords<-,CMoptions-method Man page
SynonymType Man page
SynonymType,CMoptions-method Man page
SynonymType<- Man page
SynonymType<-,CMoptions-method Man page
annotate Man page
annotate,data.frame,character,character-method Man page
annotateDF Man page
annotateDF,EntityFinder,data.frame,character,CMoptions-method Man page
annotateTissueDisease Man page Source code
collapse Man page
collapse,Onassis-method Man page
compare Man page
compare,Onassis-method Man page
connectToGEODB Man page Source code
connectToGEODB, Man page
create_score_matrix Man page Source code
dictInfo Man page
dictInfo,CMdictionary-method Man page
dictInfo<- Man page
dictInfo<-,CMdictionary-method Man page
dictRef Man page
dictRef,CMdictionary-method Man page
dictRef<- Man page
dictRef<-,CMdictionary-method Man page
dictTypes Man page Source code
dict_location Man page
dict_location,CMdictionary-method Man page
dict_location<- Man page
dict_location<-,CMdictionary-method Man page
dictionary Man page
dictionary,Onassis-method Man page
dictionary<- Man page
dictionary<-,Onassis-method Man page
entities Man page
entities,Onassis-method Man page
entities<- Man page
entities<-,Onassis-method Man page
experiment_types Man page Source code
filterTerms Man page Source code
filterconcepts Man page
filterconcepts,Onassis-method Man page
findEntities Man page
findEntities,EntityFinder,character,logical,character,CMoptions, Man page
findHealthy Man page Source code
getGEOMetadata Man page Source code
groupConfig Man page
groupConfig,Similarity-method Man page
groupConfig<- Man page
groupConfig<-,Similarity-method Man page
groupsim Man page
groupsim,Similarity,character,character-method Man page
groupwiseConfigRef Man page
groupwiseConfigRef,Similarity-method Man page
groupwiseConfigRef<- Man page
groupwiseConfigRef<-,Similarity-method Man page
icConfig Man page
icConfig,Similarity-method Man page
icConfig<- Man page
icConfig<-,Similarity-method Man page
initJavaLibs Source code
jgc Source code
listCMOptions Man page Source code
listSimilarities Man page Source code
loadEntities Source code
mergeonassis Man page
mergeonassis,Onassis,Onassis-method Man page
multisim Man page
multisim,list,list,character,character-method Man page
onAttach Source code
onLoad Source code
ontology Man page
ontology,Similarity-method Man page
ontology<- Man page
ontology<-,Similarity-method Man page
organism_types Man page Source code
pairsim Man page
pairsim,Similarity,character,character-method Man page
pairwiseConfig Man page
pairwiseConfig,Similarity-method Man page
pairwiseConfig<- Man page
pairwiseConfig<-,Similarity-method Man page
pairwiseConfigRef Man page
pairwiseConfigRef,Similarity-method Man page
pairwiseConfigRef<- Man page
pairwiseConfigRef<-,Similarity-method Man page
paramValueIndex Man page
paramValueIndex,CMoptions-method Man page
paramValueIndex<- Man page
paramValueIndex<-,CMoptions-method Man page
parseLineByLine Source code
prepareEntrezDictionary Source code
samplesim Man page
samplesim,Similarity,character,character,data.frame-method Man page
scores Man page
scores,Onassis-method Man page
scores<- Man page
scores<-,Onassis-method Man page
semanticdifference Man page Source code
show,CMoptions-method Man page
sim Man page
sim,Onassis-method Man page
simil Man page
simil,Onassis-method Man page
simil<- Man page
simil<-,Onassis-method Man page
similarityInstance Man page
similarityInstance,Similarity-method Man page
similarityInstance<- Man page
similarityInstance<-,Similarity-method Man page
typeSystemRef Man page
typeSystemRef,EntityFinder-method Man page
typeSystemRef<- Man page
typeSystemRef<-,EntityFinder-method Man page
eugeniaeueu/Onassis documentation built on July 13, 2018, 2:25 p.m.