organism_types: 'organism_types'

Description Usage Arguments Value Examples

View source: R/GEOHandler.R

Description

This method retrierves the allowed organisms in GEOmetadb

Usage

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organism_types(geo_con)

Arguments

geo_con

connection to the SQLite GEOmetadb databse

Value

A character vector with all the possible organism values

Examples

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if(file.exists('GEOmetadb.sqlite')){
 geo_con <- connectToGEODB('GEOmetadb.sqlite')
 species <- organism_types(geo_con)
}else{
 print('You need to download GEOmetadb.sqlite to run this example')
}

eugeniaeueu/Onassis documentation built on March 9, 2020, 8:17 a.m.