findHealthy: 'findHealthy'

Description Usage Arguments Value Examples

View source: R/AllFunctions.R

Description

findHealthy annotates as 'Healthy' the samples whose metadata matches with one of the elements of a list of sentence used to describe the normal disease state or healthy.

Usage

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findHealthy(metadata_df)

Arguments

metadata_df

a data frame where the first column corresponds to the identifier of a sample #' and the other columns the metadata relative to the sample

Value

a data frame with healthy samples annotated as 'Healthy'

Examples

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metadatafile <- readRDS(system.file('extdata', 'vignette_data',
'GEO_human_chip.rds', package='Onassis'))

healthy_gsms <- findHealthy(metadatafile)

eugeniaeueu/Onassis documentation built on March 9, 2020, 8:17 a.m.