Files in eugeniaeueu/Onassis
OnASSIs Ontology Annotation and Semantic SImilarity software

.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/AllClasses.R R/AllConstructors.R R/AllFunctions.R R/AllGenerics.R R/CMdict-methods.R R/CMoptions-methods.R R/EntityFinder-methods.R R/GEOHandler.R R/Init_methods.R R/Onassis-methods.R R/SupportingFunctions.r R/onLoad.R R/similarity-methods.R README.md
inst/NEWS.Rd
inst/extdata/HistonesAndVariants.txt
inst/extdata/Options_table.rds
inst/extdata/cmDict-sample.cs.xml
inst/extdata/list_of_annotations.rds
inst/extdata/sample_granges.rds
inst/extdata/test_samples/test_samples.txt
inst/extdata/vignette_data/GEO_human_chip.rds
inst/extdata/vignette_data/GEOmethylation.rds
inst/extdata/vignette_data/experiment_types.rds
inst/extdata/vignette_data/h3k27ac_metadata.rds
inst/extdata/vignette_data/methylation_brenda_annot.rds
inst/extdata/vignette_data/organisms.rds
inst/extdata/vignette_data/pairwise_results.rds
inst/extdata/vignette_data/performances.rds
inst/extdata/vignette_data/samples_similarity.rds
inst/extdata/vignette_data/score_matrix.rds
inst/extdata/vignette_data/target_entities.rds
inst/java/App.java
man/CMdictionary-class.Rd man/CMdictionary.Rd man/CMoptions-class.Rd man/CMoptions.Rd man/CaseMatch.Rd man/EntityFinder-class.Rd man/EntityFinder.Rd man/FindAllMatches.Rd man/GEOHandler-functions.Rd man/Onassis-class.Rd man/Onassis.Rd man/OrderIndependentLookup.Rd man/SearchStrategy.Rd man/Similarity-class.Rd man/Similarity.Rd man/Stemmer.Rd man/StopWords.Rd man/SynonymType.Rd man/annotate.Rd man/annotateDF.Rd man/collapse.Rd man/compare.Rd man/dictInfo.Rd man/dictRef.Rd man/dictTypes.Rd man/dict_location.Rd man/dictionary.Rd man/entities.Rd man/experiment_types.Rd man/filterTerms.Rd man/filterconcepts.Rd man/findEntities.Rd man/findHealthy.Rd man/getGEOMetadata.Rd man/groupConfig.Rd man/groupsim.Rd man/groupwiseConfigRef.Rd man/icConfig.Rd man/listCMOptions.Rd man/listSimilarities.Rd man/mergeonassis.Rd man/multisim.Rd man/ontology.Rd man/organism_types.Rd man/pairsim.Rd man/pairwiseConfig.Rd man/pairwiseConfigRef.Rd man/paramValueIndex.Rd man/samplesim.Rd man/scores.Rd man/sim.Rd man/simil.Rd man/similarityInstance.Rd man/typeSystemRef.Rd vignettes/Onassis.Rmd
vignettes/bibliography.bib
eugeniaeueu/Onassis documentation built on March 9, 2020, 8:17 a.m.