Files in eugeniaeueu/Onassis
OnASSIs Ontology Annotation and Semantic SImilarity software
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllConstructors.R
R/AllFunctions.R
R/AllGenerics.R
R/CMdict-methods.R
R/CMoptions-methods.R
R/EntityFinder-methods.R
R/GEOHandler.R
R/Init_methods.R
R/Onassis-methods.R
R/SupportingFunctions.r
R/onLoad.R
R/similarity-methods.R
README.md
inst/NEWS.Rd
inst/extdata/HistonesAndVariants.txt
inst/extdata/Options_table.rds
inst/extdata/cmDict-sample.cs.xml
inst/extdata/list_of_annotations.rds
inst/extdata/sample_granges.rds
inst/extdata/test_samples/test_samples.txt
inst/extdata/vignette_data/GEO_human_chip.rds
inst/extdata/vignette_data/GEOmethylation.rds
inst/extdata/vignette_data/experiment_types.rds
inst/extdata/vignette_data/h3k27ac_metadata.rds
inst/extdata/vignette_data/methylation_brenda_annot.rds
inst/extdata/vignette_data/organisms.rds
inst/extdata/vignette_data/pairwise_results.rds
inst/extdata/vignette_data/performances.rds
inst/extdata/vignette_data/samples_similarity.rds
inst/extdata/vignette_data/score_matrix.rds
inst/extdata/vignette_data/target_entities.rds
inst/java/App.java
man/CMdictionary-class.Rd
man/CMdictionary.Rd
man/CMoptions-class.Rd
man/CMoptions.Rd
man/CaseMatch.Rd
man/EntityFinder-class.Rd
man/EntityFinder.Rd
man/FindAllMatches.Rd
man/GEOHandler-functions.Rd
man/Onassis-class.Rd
man/Onassis.Rd
man/OrderIndependentLookup.Rd
man/SearchStrategy.Rd
man/Similarity-class.Rd
man/Similarity.Rd
man/Stemmer.Rd
man/StopWords.Rd
man/SynonymType.Rd
man/annotate.Rd
man/annotateDF.Rd
man/collapse.Rd
man/compare.Rd
man/dictInfo.Rd
man/dictRef.Rd
man/dictTypes.Rd
man/dict_location.Rd
man/dictionary.Rd
man/entities.Rd
man/experiment_types.Rd
man/filterTerms.Rd
man/filterconcepts.Rd
man/findEntities.Rd
man/findHealthy.Rd
man/getGEOMetadata.Rd
man/groupConfig.Rd
man/groupsim.Rd
man/groupwiseConfigRef.Rd
man/icConfig.Rd
man/listCMOptions.Rd
man/listSimilarities.Rd
man/mergeonassis.Rd
man/multisim.Rd
man/ontology.Rd
man/organism_types.Rd
man/pairsim.Rd
man/pairwiseConfig.Rd
man/pairwiseConfigRef.Rd
man/paramValueIndex.Rd
man/samplesim.Rd
man/scores.Rd
man/sim.Rd
man/simil.Rd
man/similarityInstance.Rd
man/typeSystemRef.Rd
vignettes/Onassis.Rmd
vignettes/bibliography.bib
