eyalbenda/bulkPop: Simulate a propogating population with a set of genetic variants

The package includes functions to build a genome object, that include variants, their physical and genetic positions, and names, and based on this object create and propagate a population.It is built specifically for c. elegans, and the recombination and cross functions are built to handle elegans genome structure with regards to sex chromosomes (xx/x0) and zeel-1/peel-1 selection, which is baked in.

Getting started

Package details

AuthorEyal Ben-David
MaintainerEyal Ben-David <[email protected]>
LicenseMIT + file LICENSE
Version0.3
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("eyalbenda/bulkPop")
eyalbenda/bulkPop documentation built on Feb. 18, 2018, 12:41 a.m.