crossIndividuals: Cross two indiviiduals Workhorse function to cross two...

In eyalbenda/bulkPop: Simulate a propogating population with a set of genetic variants

Description

Cross two indiviiduals Workhorse function to cross two individuals. Usually isn't called directly but useful for customized simulations Takes two parents, recombines them, than randomly generates a progeny by a combination of one haplotype of each.

Usage

crossIndividuals(parent1, parent2, genome, incompatibility = NULL,
  sex = "random", Nrecombs = 1)

Arguments

parent1	first parent. an individual object
parent2	second parent. an indiviudal object
genome	a genome object, should correspond to both individuals
incompatibility	a list of incompatibilities. Each incompatibility is a list with two elements: params and func. The func is the function that tests the recombined parents and the offspring and determines if it's dead or not. See the functions zeelPeelSelection and medeaSelection for example of functions included in the package.
sex	what sex should the offspring have. either "random", or male (0,"0","male","m") or female (1,"1","female","f")
Nrecombs	number of recombination per chromosome

eyalbenda/bulkPop documentation built on May 17, 2019, 11:14 p.m.