newGenome: Create a new genome object - object including all markers and...

In eyalbenda/bulkPop: Simulate a propogating population with a set of genetic variants

Description

Create a new genome object - object including all markers and the recombination rates between them

Usage

newGenome(name, Nchrom, markerNames, markerChrom, markerPos, recombProbs, map,
  Nrecs = 1e+06)

Arguments

name	Name of the genome object
Nchrom	Number of chromosomes
markerNames	A vector of the name of the markers
markerChrom	A vector of the chromosome of each marker
markerPos	A vector of the position (in basepairs) of each marker
recombProbs	A vector of the recombination probability between each two successive markers (can be generated from a genetic map using recombProbFromGeneticDistance)
map	The genetic distance between two successive genetic markers
Nrecs	Number of recombination positions to simulate when generating the genome object (recombination spots in crosses will be cycled through this object to save time. Defaults to 1,000,000)

eyalbenda/bulkPop documentation built on May 17, 2019, 11:14 p.m.