getGenotypes: Get the genotype of the individual at a variant or position...

In eyalbenda/bulkPop: Simulate a propogating population with a set of genetic variants

Description

Get the genotype of the individual at a variant or position Either an exact chromosome and position or a variant name are required see the function findProxyForPosition for an easy way to find closest variant to any position in the genome

Usage

getGenotypes(individual, genome, haplotype = c(1, 2), var = NULL,
  chrom = NULL, pos = NULL)

Arguments

individual	an individual to query
genome	a genome object corresponding to the individual
haplotype	which haplotype to query
var	variant name
chrom	chromosome to query
pos	position to query

eyalbenda/bulkPop documentation built on May 17, 2019, 11:14 p.m.