collapse_mutation_types: Collapses mutation types of G>N and A>N mutations into C>N...

In eyzhao/SignIT: What the Package Does (One Line, Title Case)

Description

Collapses mutation types of G>N and A>N mutations into C>N and T>N mutations so that there are 6 possible base changes.

Usage

collapse_mutation_types(mutation_types)

Arguments

mutation_types

Character vector of mutation types in format C[T>A]G as an example of a T>A mutation in CTG trinucleotide context.

Value

New mutation types with any G>N/A>N mutations replaced and their trinucleotide contexts reverse complemented

eyzhao/SignIT documentation built on Dec. 6, 2019, 11:45 a.m.