API for eyzhao/SignIT
Mutation signatures in individual tumours

Global functions
all_snv_mutation_types Man page Source code
base_complement Man page Source code
collapse_mutation_types Man page Source code
collapse_signatures_by_bleed Source code
collapse_signatures_by_bleed_all_solutions Source code
compute_population_bic Man page Source code
compute_population_model_log_likelihood Man page Source code
compute_population_signatures_bic Man page Source code
compute_population_signatures_log_likelihood Man page Source code
compute_population_signatures_waic Man page Source code
compute_signatures_waic Man page Man page Source code Source code
get_density_mode Man page Source code
get_exposure_pairwise_correlations Man page Source code
get_exposure_summary_table Man page Source code
get_exposures Man page Source code
get_os Man page Source code
get_population_parameter_estimates Man page Source code
get_population_signatures Man page Source code
get_populations Man page Source code
get_reference_signatures Man page Source code
get_signature_bleed_graph Man page Source code
get_signature_names Man page Source code
get_snv_mutation_type Man page Source code
get_trinucleotide Man page Source code
get_vaf_correction Man page Source code
map_phi_to_population Man page Source code
map_phi_to_signature Man page Source code
map_population_signatures Man page Source code
mcmc_exposures_as_matrix Man page Source code
mutation_types_match Man page Source code
mutations_to_catalog Man page Source code
normalize_reference_signatures Man page Source code
onLoad Source code
parse_stan_output Man page Source code
plot_bleed_interactions Man page Source code
plot_exposure_chain Man page Source code
plot_exposure_posteriors Man page Source code
plot_exposure_posteriors_bleed Man page Source code
plot_nnls_solution Man page Source code
plot_population_signatures Man page Source code
plot_signature_pairwise_bleed Man page Source code
plot_two_signature_hexplot Man page Source code
reference_signatures_as_matrix Man page Source code
reverse_factor_levels Man page Source code
reverse_factor_ranks Man page Source code
rotate_x_axis_labels Man page Source code
select_n_populations Man page Source code
signit Man page
signit-package Man page
stitch_mutation_types Man page Source code
subset_reference_signatures Man page Source code
summarise_population_signatures Man page Source code
trim_signature_names Man page Source code
eyzhao/SignIT documentation built on Aug. 29, 2018, 6:53 a.m.