get_trinucleotide: Gets the trinucleotide context for a set of genomic...
In eyzhao/SignIT: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Value
View source: R/get_mutation_types.R
Description
Gets the trinucleotide context for a set of genomic coordinates.
Usage
1
get_trinucleotide(chr, pos, ref, genome = NULL)
Arguments
chr
Character vector of chromosome names. Must match provided genome.
pos
Integer vector of genomic positions.
genome
BSgenome object - default is BSgenome.Hsapiens.UCSC.hg19
Value
Character vector of trinucleotide contexts
eyzhao/SignIT documentation built on Dec. 6, 2019, 11:45 a.m.
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Description Usage Arguments Value
View source: R/get_mutation_types.R
Description
Gets the trinucleotide context for a set of genomic coordinates.
Usage
1 | get_trinucleotide(chr, pos, ref, genome = NULL)
|
Arguments
chr |
Character vector of chromosome names. Must match provided genome. |
pos |
Integer vector of genomic positions. |
genome |
BSgenome object - default is BSgenome.Hsapiens.UCSC.hg19 |
Value
Character vector of trinucleotide contexts
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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