get_reference_signatures: Retrieves built-in reference mutation signature sets

In eyzhao/SignIT: What the Package Does (One Line, Title Case)

Description

Built in mutation signature sets provide reference data for the analysis of N-of-1 mutation catalogs. This function provides an interface for loading these reference datasets.

Usage

get_reference_signatures(signature_set = "cosmic_30")

Arguments

signature_set

The name of the reference signature dataset. currently available options: cosmic_30 (default) - the WTSI 30 SNV signatures cosmic_30_exome - WTSI signatures adjusted for exome trinucleotide frequencies nikzainal_sv - Structural variant signature frequencies

Value

Data frame containing reference signatures in wide format, with a mutation_type column

eyzhao/SignIT documentation built on Dec. 6, 2019, 11:45 a.m.