API for eyzhao/hrdtools
Homologous Recombination Deficiency Tests with Whole Genome Sequencing
| Global functions | |
|---|---|
| add_length_ratio_column | Source code |
| add_neighbours_column | Source code |
| attach_values | Source code |
| contig | Source code |
| count_lst | Man page |
| crosses_centromere | Man page Source code |
| determine_ncores | Source code |
| export_process_plot | Source code |
| filter_ranges | Source code |
| get_centromere_regions | Man page Source code |
| get_filtering_plot | Source code |
| get_hrd_score_plot | Source code |
| get_reference_signatures | Man page Source code |
| get_subtelomere_coordinate | Man page Source code |
| get_subtelomere_regions | Man page Source code |
| import_ranges | Man page Source code |
| import_snvs | Man page Source code |
| import_vcf | Source code |
| loh_test | Man page Source code |
| loh_test_bool | Source code |
| lst_test | Man page Source code |
| lst_test_bool | Source code |
| mutation_catalog | Man page Source code |
| nnls_exposures | Man page Source code |
| nnls_exposures_worker | Man page Source code |
| nnls_montecarlo | Man page Source code |
| plot_nnls_exposures | Source code |
| run_filter | Source code |
| run_snv | Man page Source code |
| run_test | Man page Source code |
| sanitize_granges | Source code |
| sanitize_vranges | Source code |
| stitch | Man page Source code |
| tai_test | Man page Source code |
| tai_test_bool | Source code |
| test_multiple | Man page Source code |
