Files in eyzhao/hrdtools
Homologous Recombination Deficiency Tests with Whole Genome Sequencing
DESCRIPTION
LICENSE
NAMESPACE
R/.svn/all-wcprops
R/.svn/entries
R/.svn/prop-base/run_snv.R.svn-base
R/.svn/text-base/contig_and_filter.R.svn-base
R/.svn/text-base/get_reference_signatures.R.svn-base
R/.svn/text-base/import_ranges.R.svn-base
R/.svn/text-base/import_snvs.R.svn-base
R/.svn/text-base/import_vcf.R.svn-base
R/.svn/text-base/loh_test.R.svn-base
R/.svn/text-base/lst_test.R.svn-base
R/.svn/text-base/mutation_catalog.R.svn-base
R/.svn/text-base/nnls_exposures.R.svn-base
R/.svn/text-base/plot_hrd.R.svn-base
R/.svn/text-base/plot_nnls_results.R.svn-base
R/.svn/text-base/run_snv.R.svn-base
R/.svn/text-base/run_test.R.svn-base
R/.svn/text-base/tai_test.R.svn-base
R/.svn/text-base/test_multiple.R.svn-base
R/contig_and_filter.R
R/get_reference_signatures.R
R/import_ranges.R
R/import_snvs.R
R/import_vcf.R
R/loh_test.R
R/lst_test.R
R/mutation_catalog.R
R/nnls_exposures.R
R/plot_hrd.R
R/plot_nnls_results.R
R/run_snv.R
R/run_test.R
R/tai_test.R
R/test_multiple.R
README.md
bin/.svn/all-wcprops
bin/.svn/entries
bin/.svn/prop-base/run_snv.R.svn-base
bin/.svn/prop-base/run_test.R.svn-base
bin/.svn/prop-base/test_multiple.R.svn-base
bin/.svn/text-base/plot_hrd_signature_scatter.R.svn-base
bin/.svn/text-base/run_snv.R.svn-base
bin/.svn/text-base/run_test.R.svn-base
bin/.svn/text-base/test_multiple.R.svn-base
bin/plot_hrd_signature_scatter.R
bin/run_snv.R
bin/run_test.R
bin/test_multiple.R
data/.svn/all-wcprops
data/.svn/entries
data/.svn/prop-base/centromeres.RData.svn-base
data/.svn/prop-base/hg19.chrom.sizes.RData.svn-base
data/.svn/prop-base/reference.signatures.RData.svn-base
data/.svn/prop-base/subtelomeres.RData.svn-base
data/.svn/text-base/centromeres.RData.svn-base
data/.svn/text-base/hg19.chrom.sizes.RData.svn-base
data/.svn/text-base/reference.signatures.RData.svn-base
data/.svn/text-base/subtelomeres.RData.svn-base
data/centromeres.RData
data/hg19.chrom.sizes.RData
data/reference.signatures.RData
data/subtelomeres.RData
hrdtools.Rproj
hrdtools.pdf
man/.svn/all-wcprops
man/.svn/entries
man/.svn/text-base/count_lst.Rd.svn-base
man/.svn/text-base/crosses_centromere.Rd.svn-base
man/.svn/text-base/get_centromere_regions.Rd.svn-base
man/.svn/text-base/get_reference_signatures.Rd.svn-base
man/.svn/text-base/get_subtelomere_coordinate.Rd.svn-base
man/.svn/text-base/get_subtelomere_regions.Rd.svn-base
man/.svn/text-base/import_ranges.Rd.svn-base
man/.svn/text-base/import_snvs.Rd.svn-base
man/.svn/text-base/loh_test.Rd.svn-base
man/.svn/text-base/lst_test.Rd.svn-base
man/.svn/text-base/mutation_catalog.Rd.svn-base
man/.svn/text-base/nnls_exposures.Rd.svn-base
man/.svn/text-base/nnls_exposures_worker.Rd.svn-base
man/.svn/text-base/nnls_montecarlo.Rd.svn-base
man/.svn/text-base/run_snv.Rd.svn-base
man/.svn/text-base/run_test.Rd.svn-base
man/.svn/text-base/stitch.Rd.svn-base
man/.svn/text-base/tai_test.Rd.svn-base
man/.svn/text-base/test_multiple.Rd.svn-base
man/count_lst.Rd
man/crosses_centromere.Rd
man/get_centromere_regions.Rd
man/get_reference_signatures.Rd
man/get_subtelomere_coordinate.Rd
man/get_subtelomere_regions.Rd
man/import_ranges.Rd
man/import_snvs.Rd
man/loh_test.Rd
man/lst_test.Rd
man/mutation_catalog.Rd
man/nnls_exposures.Rd
man/nnls_exposures_worker.Rd
man/nnls_montecarlo.Rd
man/run_snv.Rd
man/run_test.Rd
man/stitch.Rd
man/tai_test.Rd
man/test_multiple.Rd
textdata/.svn/all-wcprops
textdata/.svn/entries
textdata/.svn/text-base/centromeres.txt.svn-base
textdata/.svn/text-base/hg19.chrom.sizes.svn-base
textdata/.svn/text-base/signatures_probabilities.txt.svn-base
textdata/.svn/text-base/subtelomere_coordinates.txt.svn-base
textdata/centromeres.txt
textdata/hg19.chrom.sizes
textdata/signatures_probabilities.txt
textdata/subtelomere_coordinates.txt
