import_ranges: Imports ranges output from APOLLOH

In eyzhao/hrdtools: Homologous Recombination Deficiency Tests with Whole Genome Sequencing

Description

This function returns a GRanges object based on the data contained in a TSV. This TSV can be output from APOLLOH or similar program.

Usage

import_ranges(path, col.names, sanitization_function = sanitize_granges)

Arguments

path	Path to LOH ranges file
col.names	A vector providing the column names of the LOH ranges file
sanitization_function	A callback function which takes a GRanges object as input and returns a sanitized version

eyzhao/hrdtools documentation built on May 21, 2019, 3:09 a.m.