test_multiple: Run the HRD Tests on Multiple Files

In eyzhao/hrdtools: Homologous Recombination Deficiency Tests with Whole Genome Sequencing

Description

This is a convenience function to run_test() on multiple files.

Usage

test_multiple(loh_files, output_file, genome = "hg19",
  number_of_cores = NULL, previous_output = NULL, log_path = NULL)

Arguments

output_file	Path to an output file where a table of the results will be stored.
genome	ID of the genome being used (default: 'hg19')
number_of_cores	Specifies number of cores to run across. If NULL, then determines number of cores automatically. (default: NULL)
previous_output	Path to output file previously generated by test_multiple. If provided, will only append new cases and not update existing ones. (default: NULL)
snv_file	Character vector of paths to SNV files

eyzhao/hrdtools documentation built on May 21, 2019, 3:09 a.m.