run_snv: Deciphers SNV Signatures
In eyzhao/hrdtools: Homologous Recombination Deficiency Tests with Whole Genome Sequencing
Description
This function loads an SNV data file and runs the mutation signature deciphering
process on it. It returns the output of nnls_exposures.
Usage
1
2
Arguments
vcf_file
Path to an VCF file, suitable for import_vcfs()
snv_file
Path to an SNV file, suitable for import_snvs()
genome
ID of the genome being used (default: 'hg19')
fractions
If TRUE, mutation signature exposures are normalized to sum to 1 (default: 'FALSE')
silent
If TRUE, does not print exposures output (default: 'FALSE')
eyzhao/hrdtools documentation built on May 21, 2019, 3:09 a.m.
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Description
This function loads an SNV data file and runs the mutation signature deciphering process on it. It returns the output of nnls_exposures.
Usage
1 2 |
Arguments
vcf_file |
Path to an VCF file, suitable for import_vcfs() |
snv_file |
Path to an SNV file, suitable for import_snvs() |
genome |
ID of the genome being used (default: 'hg19') |
fractions |
If TRUE, mutation signature exposures are normalized to sum to 1 (default: 'FALSE') |
silent |
If TRUE, does not print exposures output (default: 'FALSE') |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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