Man pages for eyzhao/hrdtools
Homologous Recombination Deficiency Tests with Whole Genome Sequencing
| count_lst | LST Counter |
| crosses_centromere | Does it Cross the Centromere? |
| get_centromere_regions | Get Centromere regions |
| get_reference_signatures | Retrieving Reference Mutation Signatures |
| get_subtelomere_coordinate | Get Subtelomere Coordinate |
| get_subtelomere_regions | Get Subtelomere data |
| import_ranges | Imports ranges output from APOLLOH |
| import_snvs | SNV Importer This function imports SNVs from a tab-delimited... |
| loh_test | The HRD-LOH Test |
| lst_test | The HRD-LST Test |
| mutation_catalog | Obtain the Mutational Catalog / Spectrum |
| nnls_exposures | Calculate signature exposures |
| nnls_exposures_worker | NNLS Worker Function |
| nnls_montecarlo | Monte Carlo Simulation of NNLS |
| run_snv | Deciphers SNV Signatures |
| run_test | Runs the LOH, TAI, and LST Tests |
| stitch | Combines identical neighbours into a single range - performed... |
| tai_test | The HRD-TAI Test |
| test_multiple | Run the HRD Tests on Multiple Files |
