Files in femeunier/LianaHPDA
.RDataTmp
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
LianaHPDA.Rproj
NAMESPACE
R/create_Rscript_PROSPECT5.R
R/invert.single.species.R
R/invert.single.species_noleafeffect.R
bash.scripts/transfer.outputs.sh
data-raw/obs_reflectance.R
data/All.spectra.ID.RDS
data/All.spectra.RDS
data/All.spectra_corrected.RDS
data/All_leaf_spectra.rds
data/All_leaf_spectra_allstudies.rds
data/DATA_Sanchez_2009_Table2.RDS
data/Guzman_all/FS070307.csv
data/Guzman_all/Metadata for distribution.xls
data/Guzman_all/PNM050307.csv
data/Guzman_all/PNM060307.csv
data/Guzman_all/meta_data_all2.csv
data/Nind.rda
data/Nspecies.rda
data/array_obs_reflectance.rda
data/data.spectra.rda
data/maxNind.rda
data/maxNspecies.rda
jobR.pbs
load.sh
log/simR.e1433488
log/simR.e1433563
log/simR.e1433810
log/simR.e1433811
log/simR.o11465275
log/simR.o1433118
log/simR.o1433487
log/simR.o1433488
log/simR.o1433563
log/simR.o1433810
log/simR.o1433811
man/hello.Rd
modellauncher/Makefile
modellauncher/modellauncher
modellauncher/modellauncher.c
out/Liana.FTS.1/MCMC.single.species.GF2.site2.species1.RDS
out/Liana.FTS.4/MCMC.single.species.GF2.site2.species4.RDS
out/Liana.FTS.5/MCMC.single.species.GF2.site2.species5.RDS
out/Liana.FTS.6/MCMC.single.species.GF2.site2.species6.RDS
out/Liana.FTS.7/MCMC.single.species.GF2.site2.species7.RDS
out/Liana.FTS.8/MCMC.single.species.GF2.site2.species8.RDS
out/Liana.FTS.9/MCMC.single.species.GF2.site2.species9.RDS
out/Liana.PNM.1/MCMC.single.species.GF2.site1.species1.RDS
out/Liana.PNM.10/MCMC.single.species.GF2.site1.species10.RDS
out/Liana.PNM.13/MCMC.single.species.GF2.site1.species13.RDS
out/Liana.PNM.14/MCMC.single.species.GF2.site1.species14.RDS
out/Liana.PNM.15/MCMC.single.species.GF2.site1.species15.RDS
out/Liana.PNM.17/MCMC.single.species.GF2.site1.species17.RDS
out/Liana.PNM.18/MCMC.single.species.GF2.site1.species18.RDS
out/Liana.PNM.19/MCMC.single.species.GF2.site1.species19.RDS
out/Liana.PNM.2/MCMC.single.species.GF2.site1.species2.RDS
out/Liana.PNM.20/MCMC.single.species.GF2.site1.species20.RDS
out/Liana.PNM.21/MCMC.single.species.GF2.site1.species21.RDS
out/Liana.PNM.22/MCMC.single.species.GF2.site1.species22.RDS
out/Liana.PNM.23/MCMC.single.species.GF2.site1.species23.RDS
out/Liana.PNM.24/MCMC.single.species.GF2.site1.species24.RDS
out/Liana.PNM.25/MCMC.single.species.GF2.site1.species25.RDS
out/Liana.PNM.26/MCMC.single.species.GF2.site1.species26.RDS
out/Liana.PNM.3/MCMC.single.species.GF2.site1.species3.RDS
out/Liana.PNM.4/MCMC.single.species.GF2.site1.species4.RDS
out/Liana.PNM.5/MCMC.single.species.GF2.site1.species5.RDS
out/Liana.PNM.8/MCMC.single.species.GF2.site1.species8.RDS
out/Liana.PNM.9/MCMC.single.species.GF2.site1.species9.RDS
out/Tree.FTS.1/MCMC.single.species.GF1.site2.species1.RDS
out/Tree.FTS.2/MCMC.single.species.GF1.site2.species2.RDS
out/Tree.FTS.3/MCMC.single.species.GF1.site2.species3.RDS
out/Tree.FTS.4/MCMC.single.species.GF1.site2.species4.RDS
out/Tree.FTS.5/MCMC.single.species.GF1.site2.species5.RDS
out/Tree.FTS.6/MCMC.single.species.GF1.site2.species6.RDS
out/Tree.FTS.7/MCMC.single.species.GF1.site2.species7.RDS
out/Tree.FTS.8/MCMC.single.species.GF1.site2.species8.RDS
out/Tree.PNM.1/MCMC.single.species.GF1.site1.species1.RDS
out/Tree.PNM.2/MCMC.single.species.GF1.site1.species2.RDS
out/Tree.PNM.3/MCMC.single.species.GF1.site1.species3.RDS
out/Tree.PNM.4/MCMC.single.species.GF1.site1.species4.RDS
out/Tree.PNM.5/MCMC.single.species.GF1.site1.species5.RDS
out/Tree.PNM.6/MCMC.single.species.GF1.site1.species6.RDS
out/Tree.PNM.7/MCMC.single.species.GF1.site1.species7.RDS
out/Tree.PNM.8/MCMC.single.species.GF1.site1.species8.RDS
out/Tree.PNM.9/MCMC.single.species.GF1.site1.species9.RDS
outputs/MCMC.RDS
outputs/MCMC.multiplespecies.RDS
outputs/MCMC.multispecies.RDS
outputs/MCMC.single.species.GF1.site1.species1.RDS
outputs/mcmc.RDS
run/Liana.FTS.1/script.R
run/Liana.FTS.1/stderr.txt
run/Liana.FTS.1/stdout.txt
run/Liana.FTS.2/script.R
run/Liana.FTS.2/stderr.txt
run/Liana.FTS.2/stdout.txt
run/Liana.FTS.3/script.R
run/Liana.FTS.3/stderr.txt
run/Liana.FTS.3/stdout.txt
run/Liana.FTS.4/script.R
run/Liana.FTS.4/stderr.txt
run/Liana.FTS.4/stdout.txt
run/Liana.FTS.5/script.R
run/Liana.FTS.5/stderr.txt
run/Liana.FTS.5/stdout.txt
run/Liana.FTS.6/script.R
run/Liana.FTS.6/stderr.txt
run/Liana.FTS.6/stdout.txt
run/Liana.FTS.7/script.R
run/Liana.FTS.7/stderr.txt
run/Liana.FTS.7/stdout.txt
run/Liana.FTS.8/joblist.txt
run/Liana.FTS.8/launcher.sh
run/Liana.FTS.8/script.R
run/Liana.PNM.1/joblist.txt
run/Liana.PNM.1/launcher.sh
run/Liana.PNM.1/script.R
run/Liana.PNM.1/stderr.txt
run/Liana.PNM.1/stdout.txt
run/Liana.PNM.2/script.R
run/Liana.PNM.2/stderr.txt
run/Liana.PNM.2/stdout.txt
run/Liana.PNM.3/script.R
run/Liana.PNM.3/stderr.txt
run/Liana.PNM.3/stdout.txt
run/Liana.PNM.4/script.R
run/Liana.PNM.4/stderr.txt
run/Liana.PNM.4/stdout.txt
run/Liana.PNM.5/script.R
run/Liana.PNM.5/stderr.txt
run/Liana.PNM.5/stdout.txt
run/Liana.PNM.6/script.R
run/Liana.PNM.6/stderr.txt
run/Liana.PNM.6/stdout.txt
run/Liana.PNM.7/script.R
run/Liana.PNM.7/stderr.txt
run/Liana.PNM.7/stdout.txt
run/Liana.PNM.8/script.R
run/Liana.PNM.8/stderr.txt
run/Liana.PNM.8/stdout.txt
run/Liana.PNM.9/script.R
run/Liana.PNM.9/stderr.txt
run/Liana.PNM.9/stdout.txt
run/Tree.FTS.1/script.R
run/Tree.FTS.2/script.R
run/Tree.FTS.3/script.R
run/Tree.FTS.4/script.R
run/Tree.FTS.5/script.R
run/Tree.FTS.6/joblist.txt
run/Tree.FTS.6/launcher.sh
run/Tree.FTS.6/script.R
run/Tree.FTS.7/script.R
run/Tree.FTS.8/script.R
run/Tree.FTS.9/script.R
run/Tree.PNM.1/script.R
run/Tree.PNM.10/script.R
run/Tree.PNM.11/script.R
run/Tree.PNM.12/script.R
run/Tree.PNM.13/script.R
run/Tree.PNM.14/script.R
run/Tree.PNM.15/script.R
run/Tree.PNM.16/joblist.txt
run/Tree.PNM.16/launcher.sh
run/Tree.PNM.16/script.R
run/Tree.PNM.17/script.R
run/Tree.PNM.18/script.R
run/Tree.PNM.19/script.R
run/Tree.PNM.2/script.R
run/Tree.PNM.20/script.R
run/Tree.PNM.21/script.R
run/Tree.PNM.22/script.R
run/Tree.PNM.23/script.R
run/Tree.PNM.24/script.R
run/Tree.PNM.25/script.R
run/Tree.PNM.26/script.R
run/Tree.PNM.3/script.R
run/Tree.PNM.4/script.R
run/Tree.PNM.5/script.R
run/Tree.PNM.6/script.R
run/Tree.PNM.7/script.R
run/Tree.PNM.8/script.R
run/Tree.PNM.9/script.R
scripts/HPDA.multiple.GFs.R
scripts/HPDA.multiple.sites.R
scripts/HPDA.multiple.species.R
scripts/HPDA.species.R
scripts/Rplots.pdf
scripts/TODOcleandataset.R
scripts/cleandataset.R
scripts/comp.NIMBLE.and.BT.R
scripts/data.Table2.Sanchez.R
scripts/example.HPDA.R
scripts/example.NIMBLE.R
scripts/explore.data.spectra.R
scripts/explore_NIMBLE.R
scripts/format.data.all.studies.R
scripts/gather.all.species.R
scripts/kill.runs.R
scripts/optimize.HPC.R
scripts/optimize.LandT.data.R
scripts/optimize.LandT.single.leaf.R
scripts/optimize.LandT.single.leaf.data.R
scripts/optimize.LandT.sites.data.R
scripts/optimize.LandT.sites.interaction.all.data.R
scripts/optimize.LandT.sites.interaction.all.data.Rout
scripts/optimize.LandT.sites.interaction.data.R
scripts/optimize.all.data.R
scripts/optimize.all.re.R
scripts/optimize.single.leaf.R
scripts/optimize.single.leaf.data.R
scripts/optimize.sites.data.R
scripts/post.HPC.R
scripts/prepare.spectra.R
scripts/run_PROSPECT_Nimble.R
scripts/run_prospect5.R
scripts/sequential.DA.R
scripts/submit.all.species.R
scripts/submit.all.species_noleaf.R
scripts/test.R
scripts/test.optimize.N.single.ind.R
scripts/test_crate_Rscript_PROSPECT5.R
scripts/test_exp.approx.R
scripts/trueHPDA.R
scripts/trueHPDA.re.R
