| .add_inner_label |
Source code
|
| .add_leaf_label |
Source code
|
| .aggFun |
Source code
|
| .agg_assay |
Source code
|
| .agg_col |
Source code
|
| .agg_row |
Source code
|
| .all_equal_in_list |
Man page
Source code
|
| .all_have_DNAStringSet |
Man page
Source code
|
| .all_have_DNAStringSetList |
Man page
Source code
|
| .all_nonnull_in_list |
Man page
Source code
|
| .all_null_in_list |
Man page
Source code
|
| .any_null_in_list |
Man page
Source code
|
| .assign_node |
Source code
|
| .auto_rename_list |
Man page
Source code
|
| .bind_link_tree |
Man page
Source code
|
| .capture_last_noNA |
Source code
|
| .convert_to_edges |
Source code
|
| .diffPath |
Source code
|
| .drop_link |
Source code
|
| .is_equal_link |
Man page
Source code
|
| .lack_whichTree |
Source code
|
| .linkFun |
Source code
|
| .match_phylo |
Man page
Source code
|
| .match_phylo_list |
Man page
Source code
|
| .match_x_dupY |
Man page
Source code
|
| .move_na_to_end |
Source code
|
| .name_y_with_x |
Man page
Source code
|
| .numeric_ij |
Man page
Source code
|
| .rbind_refSeq |
Man page
Source code
|
| .rep_df |
Source code
|
| .replace_link_tree_1d |
Man page
Source code
|
| .replace_link_tree_2d |
Source code
|
| .replace_tree |
Source code
|
| .replace_with_nodeID |
Source code
|
| .samePath |
Source code
|
| .sce_to_tse |
Source code
|
| .set_referenceSeq |
Source code
|
| .solveLoop |
Source code
|
| .subset_leaf |
Man page
Source code
|
| .unique_or_na |
Source code
|
| .update_link_tree |
Source code
|
| .update_whichTree |
Man page
Source code
|
| LinkDataFrame |
Man page
Source code
|
| LinkDataFrame-class |
Man page
|
| LinkDataFrame-constructor |
Man page
|
| TreeSummarizedExperiment |
Man page
Source code
|
| TreeSummarizedExperiment-accessor |
Man page
|
| TreeSummarizedExperiment-class |
Man page
|
| TreeSummarizedExperiment-combine |
Man page
|
| TreeSummarizedExperiment-constructor |
Man page
|
| TreeSummarizedExperiment-internal |
Man page
|
| TreeeSummarizedExperiment-package |
Man page
|
| [,TreeSummarizedExperiment,ANY,ANY,ANY-method |
Man page
|
| [<-,TreeSummarizedExperiment,ANY,ANY,TreeSummarizedExperiment-me |
Man page
|
| addLabel |
Man page
Source code
|
| aggTSE |
Man page
Source code
|
| aggValue |
Man page
Source code
|
| asLeaf |
Man page
Source code
|
| asPhylo |
Man page
Source code
|
| cbind,TreeSummarizedExperiment-method |
Man page
|
| changeTree |
Man page
Source code
|
| colLinks |
Man page
|
| colLinks,TreeSummarizedExperiment-method |
Man page
|
| colTree |
Man page
|
| colTree,TreeSummarizedExperiment-method |
Man page
|
| colTree<- |
Man page
|
| colTree<-,TreeSummarizedExperiment-method |
Man page
|
| colTreeNames |
Man page
|
| colTreeNames,TreeSummarizedExperiment-method |
Man page
|
| colTreeNames<- |
Man page
|
| colTreeNames<-,TreeSummarizedExperiment-method |
Man page
|
| colnames<-,TreeSummarizedExperiment-method |
Man page
|
| convertNode |
Man page
Source code
|
| countLeaf |
Man page
Source code
|
| countNode |
Man page
Source code
|
| detectLoop |
Man page
Source code
|
| distNode |
Man page
Source code
|
| findAncestor |
Man page
Source code
|
| findChild |
Man page
Source code
|
| findDescendant |
Man page
Source code
|
| findOS |
Man page
Source code
|
| findSibling |
Man page
Source code
|
| isLeaf |
Man page
Source code
|
| joinNode |
Man page
Source code
|
| makeTSE |
Man page
Source code
|
| matTree |
Man page
Source code
|
| phylo |
Man page
|
| printNode |
Man page
Source code
|
| rbind,TreeSummarizedExperiment-method |
Man page
|
| referenceSeq |
Man page
|
| referenceSeq,TreeSummarizedExperiment-method |
Man page
|
| referenceSeq<- |
Man page
|
| referenceSeq<-,TreeSummarizedExperiment-method |
Man page
|
| resolveLoop |
Man page
Source code
|
| rowLinks |
Man page
|
| rowLinks,TreeSummarizedExperiment-method |
Man page
|
| rowTree |
Man page
|
| rowTree,TreeSummarizedExperiment-method |
Man page
|
| rowTree<- |
Man page
|
| rowTree<-,TreeSummarizedExperiment-method |
Man page
|
| rowTreeNames |
Man page
|
| rowTreeNames,TreeSummarizedExperiment-method |
Man page
|
| rowTreeNames<- |
Man page
|
| rowTreeNames<-,TreeSummarizedExperiment-method |
Man page
|
| rownames<-,TreeSummarizedExperiment-method |
Man page
|
| shareNode |
Man page
Source code
|
| showNode |
Man page
Source code
|
| signalNode |
Man page
Source code
|
| subsetByLeaf |
Man page
|
| subsetByLeaf,TreeSummarizedExperiment-method |
Man page
|
| subsetByNode |
Man page
|
| subsetByNode,TreeSummarizedExperiment-method |
Man page
|
| tinyTree |
Man page
|
| toTree |
Man page
Source code
|
| trackNode |
Man page
Source code
|
| transNode |
Man page
Source code
|
| unionLeaf |
Man page
Source code
|
| updateObject,TreeSummarizedExperiment-method |
Man page
|
| vertical_slot_names,TreeSummarizedExperiment-method |
Man page
|
