cal_scalefactor: cal_scalefactor
In fl-yu/SCAVENGE: Identifying genetic trait/phenotype relevant cell type/state at single cell resolution
View source: R/cal_scalefactor.R
cal_scalefactor R Documentation
cal_scalefactor
Description
used for generate a scale factor from bias-corrected Z score for TRS scale and normalization
Usage
cal_scalefactor(z_score, percent_cut = 0.01)
Arguments
z_score
a numeric vector that is original Z scores for individual cells calculated from gchromVAR
percent_cut
a numeric number (0, 1) indicating what percentage of most enriched cells will be selected to calculate scale factor
Value
a numeric value
Examples
## Not run: cal_scalefactor <- seedindx(z_score_mat$z_score, 0.01)
fl-yu/SCAVENGE documentation built on April 2, 2022, 10:56 a.m.
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View source: R/cal_scalefactor.R
| cal_scalefactor | R Documentation |
cal_scalefactor
Description
used for generate a scale factor from bias-corrected Z score for TRS scale and normalization
Usage
cal_scalefactor(z_score, percent_cut = 0.01)
Arguments
z_score |
a numeric vector that is original Z scores for individual cells calculated from gchromVAR |
percent_cut |
a numeric number (0, 1) indicating what percentage of most enriched cells will be selected to calculate scale factor |
Value
a numeric value
Examples
## Not run: cal_scalefactor <- seedindx(z_score_mat$z_score, 0.01)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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