getmutualknn: getmutualknn
In fl-yu/SCAVENGE: Identifying genetic trait/phenotype relevant cell type/state at single cell resolution
getmutualknn R Documentation
getmutualknn
Description
Get a mutual kNN graph (M-kNN) from the latent space (LSI) of single cell profiles
Usage
getmutualknn(lsimat = lsimat, num_k = 30)
Arguments
lsimat
A dense or sparse matrix of cell (rows) x LSI (cols)
num_k
A numeric input (30 by default) for k used for graph construction
Value
A sparse matrix indicating adjacent matrix from single cells used for graph construction
Examples
## Not run:
mknn_graph <- getmutualknn(lsimat=LSI_mat, num_k=30)
## End(Not run)
fl-yu/SCAVENGE documentation built on April 2, 2022, 10:56 a.m.
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| getmutualknn | R Documentation |
getmutualknn
Description
Get a mutual kNN graph (M-kNN) from the latent space (LSI) of single cell profiles
Usage
getmutualknn(lsimat = lsimat, num_k = 30)
Arguments
lsimat |
A dense or sparse matrix of cell (rows) x LSI (cols) |
num_k |
A numeric input (30 by default) for k used for graph construction |
Value
A sparse matrix indicating adjacent matrix from single cells used for graph construction
Examples
## Not run: mknn_graph <- getmutualknn(lsimat=LSI_mat, num_k=30) ## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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