do_lsi: do_lsi
In fl-yu/SCAVENGE: Identifying genetic trait/phenotype relevant cell type/state at single cell resolution
do_lsi R Documentation
do_lsi
Description
Get a LSI matrix (cell-by-LSI) from TF-IDF matrix from single cell profiles
Usage
do_lsi(mat, dims = 30)
Arguments
mat
(sparse matrix) A saparse matrix of TF-IDF matrix (LSI) used for SVD
dims
number of LSIs to calculate (default:30)
Value
a sparse matrix of LSI
Examples
## Not run: lsi_mat <- do_lsi(tfidf_mat, dims=30)
fl-yu/SCAVENGE documentation built on April 2, 2022, 10:56 a.m.
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| do_lsi | R Documentation |
do_lsi
Description
Get a LSI matrix (cell-by-LSI) from TF-IDF matrix from single cell profiles
Usage
do_lsi(mat, dims = 30)
Arguments
mat |
(sparse matrix) A saparse matrix of TF-IDF matrix (LSI) used for SVD |
dims |
number of LSIs to calculate (default:30) |
Value
a sparse matrix of LSI
Examples
## Not run: lsi_mat <- do_lsi(tfidf_mat, dims=30)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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