seedindex: seedindx
In fl-yu/SCAVENGE: Identifying genetic trait/phenotype relevant cell type/state at single cell resolution
seedindex R Documentation
seedindx
Description
used for generate seed cell index from bias-corrected Z score
Usage
seedindex(z_score, percent_cut = 0.05)
Arguments
z_score
a numeric vector that is original Z scores for individual cells calculated from gchromVAR
percent_cut
a numeric number (0, 1) indicating what percentage of cells will be selected as seed cells if too many cells fit the P value<0.05 cutoff
Value
a logical vector indicating seed cells or not
Examples
## Not run: seed_idx <- seedindx(z_score_mat$z_score, 0.1)
fl-yu/SCAVENGE documentation built on April 2, 2022, 10:56 a.m.
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| seedindex | R Documentation |
seedindx
Description
used for generate seed cell index from bias-corrected Z score
Usage
seedindex(z_score, percent_cut = 0.05)
Arguments
z_score |
a numeric vector that is original Z scores for individual cells calculated from gchromVAR |
percent_cut |
a numeric number (0, 1) indicating what percentage of cells will be selected as seed cells if too many cells fit the P value<0.05 cutoff |
Value
a logical vector indicating seed cells or not
Examples
## Not run: seed_idx <- seedindx(z_score_mat$z_score, 0.1)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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