Files in flr/FLa4a
A Simple and Robust Statistical Catch at Age Model

.Rbuildignore
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.gitignore
.travis.yml
BinaryFiles
DESCRIPTION
Makefile
NAMESPACE
NEWS
NEWS.md R/FLCompMethods.R R/FLModelSimMethods.R R/SCAMCMC-class.R R/SCAPars-class.R R/a4aFit-class.R R/a4aFitCatchDiagn-class.R R/a4aFitMCMC-class.R R/a4aFitSA-class.R R/a4aFitSAs-class.R R/a4aFitresiduals-class.R R/a4aGr-class.R R/a4aGr-methods.R R/a4aM-class.R R/a4aM-methods.R R/a4aStkParams-class.R R/a4amse-sa.R R/addition-methods.R R/coef-methods.R R/data.R R/fittingFunctions.R R/gen-methods.R R/internal.R R/l2a-methods.R R/ma-methods.R R/predict-methods.R R/redfish-data.R R/setupModel.R R/simulate-methods.R R/southern_hake-data.R R/submodel-class.R R/submodels-class.R R/utilities.R R/vcov-methods.R README.md
_pkgdown.yml
appveyor.yml
code-experimental/Makefile
code-experimental/R/a4aFitExt-class.R code-experimental/R/a4aFitMCMC-class.R code-experimental/R/experimentalCode.R code-experimental/R/genFLQuant.R code-experimental/R/mvrnormExt.R code-experimental/R/sca.R
code-experimental/admb/a4a-annotated.tpl
code-experimental/admb/a4a-re.tpl
code-experimental/admb/a4a.tpl
code-experimental/admb/nLogNormal.h
code-experimental/boot-methods.R code-experimental/boot-methods2.R
code-experimental/ksetup.sub
code-experimental/makeTemplate/Makefile
code-experimental/makeTemplate/readme
code-experimental/modelAveragingFunctions.R code-experimental/plotting.R code-experimental/priorModels.R code-experimental/scripts/FLIndexa4a-class.R code-experimental/scripts/FLStock4a-class.R
code-experimental/scripts/Makevars
code-experimental/scripts/Makevars.win
code-experimental/scripts/a4a_utils.cpp
code-experimental/scripts/calcLogLik.R
code-experimental/template.Rnw
code-experimental/tests/test-a4aInternal.R
data/hakeGSA7.idx.rda
data/hakeGSA7.rda
data/rfLen.rdata
data/southernHakeLen.rdata
docs/404.html
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docs/articles/M.Rnw
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docs/notesmergingtmbcode.txt
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docs/sitemap.xml
inst/CITATION
inst/admb/a4a.tpl
inst/bin/linux/a4a
inst/bin/osx/a4a
inst/bin/windows/a4a.exe
man-experimental/Dfunc.Rd
man-experimental/FLBstar-methods.Rd
man-experimental/FLa4a-package.Rd
man-experimental/FLblockboot-methods.Rd
man-experimental/Qfunc.Rd
man-experimental/SCAPars-class.Rd
man-experimental/SCAPars-methods.Rd
man-experimental/a4a.Rd
man-experimental/a4a.dir.Rd
man-experimental/a4aFit-class.Rd
man-experimental/a4aFit-methods.Rd
man-experimental/a4aFitExt-class.Rd
man-experimental/a4aFitResiduals-class.Rd
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man-experimental/a4aInternal.Rd man-experimental/a4aM-class.Rd
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man-experimental/a4aStkParams-class.Rd man-experimental/addition-methods.Rd man-experimental/assorted-methods.Rd
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man-experimental/calcLogLik.Rd
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man-experimental/catch.hat-methods.Rd
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man-experimental/catch.n-methods.Rd
man-experimental/check.executable.Rd
man-experimental/coef-methods.Rd man-experimental/collapseSeasons.Rd
man-experimental/distr-set.Rd
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man-experimental/genFLIndex-methods.Rd man-experimental/genFLQuant-methods.Rd man-experimental/genFLStock-methods.Rd man-experimental/getADMBHessian.Rd man-experimental/getAcor-methods.Rd
man-experimental/getCov.Rd
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man-experimental/getYidx.Rd
man-experimental/geta4aLatticeOptions.Rd
man-experimental/grInvMod-set.Rd
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man-experimental/hakeGSA7.Rd man-experimental/hakeGSA7.idx.Rd
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man-experimental/simulate-methods.Rd man-experimental/stdlogres-methods.Rd
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man-experimental/submodel-class.Rd man-experimental/submodels-class.Rd
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man-experimental/vecage.Rd
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man-roxygen/Accessors.R man-roxygen/ClassDescription.R man-roxygen/Constructors.R man-roxygen/Example-a4aFit.R man-roxygen/Example-a4aFitResiduals.R man-roxygen/Example-a4aFitSA.R man-roxygen/Example-a4aM.R man-roxygen/Example-a4aSCA.R man-roxygen/Example-predict.R man-roxygen/Example-sca.R man-roxygen/Example-simulate.R man-roxygen/bothargs.R man-roxygen/dots.R man-roxygen/object.R man-roxygen/runa4asca.R man-roxygen/runsca.R man/SCAMCMC-class.Rd man/SCAPars-class.Rd man/a4aFit-class.Rd man/a4aFitCatchDiagn-class.Rd man/a4aFitMCMC-class.Rd man/a4aFitResiduals-class.Rd man/a4aFitSA-class.Rd man/a4aGr-class.Rd man/a4aInternal.Rd man/a4aM-class.Rd man/a4aStkParams-class.Rd man/addition-methods.Rd man/assorted-methods.Rd man/breakpts.Rd man/bubbles-methods.Rd man/coef-methods.Rd man/collapseSeasons.Rd man/defaultsubmodels.Rd man/deprecated.Rd
man/figures/logo.png
man/genFLIndex-methods.Rd man/genFLQuant-methods.Rd man/genFLStock-methods.Rd man/getADMBHessian.Rd man/getAcor-methods.Rd man/getCov-methods.Rd man/getK.Rd man/getTPL.Rd man/getX-methods.Rd man/hakeGSA7.Rd man/hakeGSA7.idx.Rd man/index_cd_len.Rd man/index_pt_len.Rd man/index_sp_len.Rd man/l2a.Rd man/m.Rd man/ma-methods.Rd man/multiplication-methods.Rd man/mvnorm-a4aM.Rd man/mvrcop-a4aGr.Rd man/mvrcop.Rd man/mvrnorm-a4aGr.Rd man/mvrtriangle-a4aGr.Rd man/mvrtriangle.Rd man/pars2dim-methods.Rd man/plot-methods.Rd man/plotc.Rd man/ploti.Rd man/predict-a4aGr.Rd man/predict-methods.Rd man/qqmath-methods.Rd man/range-a4aM.Rd man/rfLen.Rd man/rfLen.stk.Rd man/rfTrawl.idx.Rd man/rfTrawlJmp.idx.Rd man/rfTrawlTrd.idx.Rd man/sca.Rd man/sca.sa.Rd man/sep.sa.Rd man/shake_len.Rd man/simulate-methods.Rd man/southernHakeLen.Rd man/stdlogres-methods.Rd man/submodel-class.Rd man/submodels-class.Rd man/vcov-methods.Rd man/wireframe.Rd tests/addition.R
tests/addition.Rout
tests/l2a.R tests/m.R tests/mcmc.R tests/predict.R tests/residuals.R tests/sca.R tests/scssr.R tests/simulate.R tests/wcsam.R
flr/FLa4a documentation built on June 4, 2023, 11:05 a.m.