API for forestgeo/ctfs
Tools for the Analysis of Forest Dynamics
| Global functions | |
|---|---|
| AGB.dbtable | Man page |
| AGB.ind | Man page |
| AGB.tree | Man page |
| Annuli | Man page |
| AssignDiag | Man page |
| BadParam | Man page |
| CI | Man page |
| CTFSplot | Man page |
| CalcRingArea | Man page |
| Chave.AGB | Man page |
| CountByGroup | Man page |
| DBHtransition | Man page |
| Gibbs.normalmean | Man page |
| Gibbs.normalvar | Man page |
| Gibbs.regsigma | Man page |
| Gibbs.regslope | Man page |
| IfElse | Man page |
| MONTHNAMES | Man page |
| NDcount | Man page |
| NeighborDensities | Man page |
| RipUvK | Man page |
| SectionCorrection | Man page |
| StringToVect | Man page |
| TextToRdata | Man page |
| abund.manycensus | Man page |
| abundance | Man page |
| abundance.spp | Man page |
| abundanceperquad | Man page |
| abundmodel.fit | Man page |
| addBinParam | Man page |
| agb.dbhmodel | Man page |
| agb.model | Man page |
| allquadratslopes | Man page |
| angleBisector | Man page |
| are.ptsinside | Man page |
| args_of | Man page |
| arrangeParam.Gibbs | Man page |
| arrangeParam.Gibbs.2D | Man page |
| arrangeParam.llike | Man page |
| arrangeParam.llike.2D | Man page |
| assemble.demography | Man page |
| assembleBinOutput | Man page |
| asymp.ht | Man page |
| asymp.ht.fixmax | Man page |
| asymptote.exp | Man page |
| attach_if_needed | Man page |
| autoregression | Man page |
| ba | Man page |
| bad.asymexp.param | Man page |
| bad.asympower.param | Man page |
| bad.binparam | Man page |
| bad.binsdpar | Man page |
| bad.paretopar | Man page |
| badSD | Man page |
| basum | Man page |
| beta.normalized | Man page |
| beta.total | Man page |
| betaproduct | Man page |
| binGraphManySpecies | Man page |
| binGraphManySpecies.Panel | Man page |
| binGraphSampleSpecies | Man page |
| biomass.CTFSdb | Man page |
| biomass.change | Man page |
| biomass.growth | Man page |
| bootconf | Man page |
| bootstrap.corr | Man page |
| border.distance | Man page |
| calc.directionslope | Man page |
| calc.gradient | Man page |
| calcMortIndivTable | Man page |
| calcS.alpha | Man page |
| calcalpha | Man page |
| calcslope | Man page |
| calculateBinModel.AIC | Man page |
| calculateBinModel.BIC | Man page |
| calculateBinModel.bestpred | Man page |
| cartesian.to.polar | Man page |
| center.predictors | Man page |
| charlocate | Man page |
| circle | Man page |
| circlearea | Man page |
| clean.demography | Man page |
| colMedians | Man page |
| coldata.to.imagemat | Man page |
| compare.growthbinmodel | Man page |
| complete.plotmap | Man page |
| constant | Man page |
| constant.bin | Man page |
| constant.linear | Man page |
| convert.factor | Man page |
| convert.rowcol | Man page |
| countEmpty | Man page |
| countNA | Man page |
| countUnique | Man page |
| countone | Man page |
| countpresent | Man page |
| countspp | Man page |
| countzero | Man page |
| covTocorr | Man page |
| coverage.diag | Man page |
| create.fulldate | Man page |
| create.fulldate.split | Man page |
| create.neighbordata | Man page |
| ctfs | Man page |
| ctfs-package | Man page |
| cumul.above | Man page |
| d.calcS.alpha | Man page |
| dasymexp | Man page |
| dasymnorm | Man page |
| dasympower | Man page |
| dbeta.reparam | Man page |
| dbinomrev | Man page |
| default.badpar | Man page |
| define.graphwindow | Man page |
| defineBinBreaks | Man page |
| defineSDpar | Man page |
| density_ind | Man page |
| detachfiles | Man page |
| dexp.sin | Man page |
| dgamma.mean | Man page |
| dgamma.meansd | Man page |
| dgamma.scale | Man page |
| dgammaMinusdexp | Man page |
| dgammaPlusdexp | Man page |
| dgammadexp | Man page |
| discrete.model | Man page |
| discrete.mortmodel | Man page |
| distance | Man page |
| distance.to.side | Man page |
| ditch | Man page |
| dmixnorm | Man page |
| dnormprod0 | Man page |
| dnormrev | Man page |
| doublenormal | Man page |
| dpois.max | Man page |
| dpois.maxtrunc | Man page |
| dpois.rearrange | Man page |
| dpois.trunc | Man page |
| dpower | Man page |
| draw.axes | Man page |
| drawrectangle | Man page |
| drp | Man page |
| dsymexp | Man page |
| dweibull.3param | Man page |
| elev.to.list | Man page |
| ellipse | Man page |
| enoughSamplePerBin | Man page |
| exclude.unidentified | Man page |
| exp_2par | Man page |
| explode | Man page |
| expon.model | Man page |
| exponential.sin | Man page |
| extract.growthdata | Man page |
| fill.1dimension | Man page |
| fill.dimension | Man page |
| find.climits | Man page |
| find.nonNA | Man page |
| find.xaxis.hist | Man page |
| findborderquads | Man page |
| findneighborabund | Man page |
| fit.beta.normal | Man page |
| fit.logistic | Man page |
| fit.pdf | Man page |
| fitSeveralAbundModel | Man page |
| fitnorm | Man page |
| fromjulian | Man page |
| full.abundmodel.llike | Man page |
| full.likelihood.lmerBayes | Man page |
| full.xygrid | Man page |
| fullcircle | Man page |
| fullellipse | Man page |
| fullplot.imageJ | Man page |
| get.filename | Man page |
| getTopoLinks | Man page |
| getquadratname | Man page |
| getsmallerquads | Man page |
| graph.abundmodel | Man page |
| graph.growthmodel | Man page |
| graph.growthmodel.spp | Man page |
| graph.modeldiag | Man page |
| graph.mvnorm | Man page |
| graph.outliers | Man page |
| graph.outliers.spp | Man page |
| graph.quadrats | Man page |
| graphFilledBand | Man page |
| growth | Man page |
| growth.biomass.indiv | Man page |
| growth.dbh | Man page |
| growth.eachspp | Man page |
| growth.flexbin | Man page |
| growth.indiv | Man page |
| gsp | Man page |
| gxgy.to.hectindex | Man page |
| gxgy.to.index | Man page |
| gxgy.to.lxly | Man page |
| gxgy.to.quad | Man page |
| gxgy.to.rowcol | Man page |
| harmonic.mean | Man page |
| hist_compare | Man page |
| hyper.abundGibbs | Man page |
| hyper.mortGibbs | Man page |
| imageGraph | Man page |
| imageJ.to.lxly | Man page |
| image_dataframe | Man page |
| index.to.gxgy | Man page |
| index.to.rowcol | Man page |
| individual_grow.table | Man page |
| individual_mort.table | Man page |
| inside.rect | Man page |
| insideRectangle | Man page |
| intersection.line.curve | Man page |
| intersection.of.lines | Man page |
| invlogit | Man page |
| is.between | Man page |
| is.leap | Man page |
| is.odd | Man page |
| is_na_row | Man page |
| ispt.inside | Man page |
| kurtosis | Man page |
| left | Man page |
| leftbut | Man page |
| line.intersection.pts | Man page |
| linear.model | Man page |
| linear.model.ctr | Man page |
| linear.mortmodel | Man page |
| linearmodel.bin | Man page |
| linearmodel.bin.set | Man page |
| llike.GaussModel | Man page |
| llike.GaussModelSD | Man page |
| llike.linearbin.optim | Man page |
| llike.model.lmer | Man page |
| lmerBayes | Man page |
| lmerBayes.hyperllike.mean | Man page |
| lmerBayes.hyperllike.sigma | Man page |
| lmerMortFixedTime | Man page |
| lmerMortLinear | Man page |
| load.species | Man page |
| log_model | Man page |
| logical.grep | Man page |
| logistic.ctr | Man page |
| logistic.inter | Man page |
| logistic.multiplicative | Man page |
| logistic.power | Man page |
| logistic.power.mode | Man page |
| logistic.power_simple | Man page |
| logistic.standard | Man page |
| logistic.sum.squares | Man page |
| logisticmodel.bin | Man page |
| logit | Man page |
| lxly.to.p5 | Man page |
| majoraxisreg | Man page |
| majoraxisreg.no.int | Man page |
| make.CredIntervalVect | Man page |
| map | Man page |
| map1species | Man page |
| map2species | Man page |
| maptopo | Man page |
| match.dataframe | Man page |
| mergeParam | Man page |
| merge_data | Man page |
| metrop1step | Man page |
| metrop1step.discrete | Man page |
| midPoint | Man page |
| minum.beta.normal | Man page |
| minum.mixnorm | Man page |
| minum.normal | Man page |
| minum.perpdist | Man page |
| model.littleR.Gibbs | Man page |
| model.xy | Man page |
| modelBayes | Man page |
| mortality | Man page |
| mortality.calculation | Man page |
| mortality.dbh | Man page |
| mortality.eachspp | Man page |
| mvrnormRC | Man page |
| neighbors | Man page |
| nhd | Man page |
| normalproduct | Man page |
| order.by.rowcol | Man page |
| order.bynumber | Man page |
| overlay.growthbinmodel | Man page |
| parallel.line | Man page |
| partialcirclearea | Man page |
| paste_path | Man page |
| pdf.allplot | Man page |
| perpendicular.distance | Man page |
| perpendicular.line | Man page |
| pexp.sin | Man page |
| plot_wavelet | Man page |
| png.allplot | Man page |
| polar.to.cartesian | Man page |
| pop.change | Man page |
| pop.change.dbh | Man page |
| pospower | Man page |
| predht.asym | Man page |
| print_all | Man page |
| prob.N1 | Man page |
| pst | Man page |
| psymexp | Man page |
| pts.to.interceptslope | Man page |
| pweibull.3param | Man page |
| qasymexp | Man page |
| qasympower | Man page |
| quad.to.gxgy | Man page |
| quadslope | Man page |
| randomElement | Man page |
| randomRow | Man page |
| rarefy.diversity | Man page |
| rasterize | Man page |
| rasympower | Man page |
| read_csv_alt | Man page |
| readelevdata | Man page |
| rearrangeSurveyData | Man page |
| recalculate.lmerBayesllike | Man page |
| recruitment | Man page |
| recruitment.eachspp | Man page |
| regress.loglog | Man page |
| regress.plot | Man page |
| regression.Bayes | Man page |
| regslope | Man page |
| regslope.noint | Man page |
| regsum | Man page |
| resetParam | Man page |
| residual.llike.lmerBayes | Man page |
| residual.llike.modelBayes | Man page |
| restoreParamFile | Man page |
| rgamma.meansd | Man page |
| right | Man page |
| rightbut | Man page |
| rm_na_row | Man page |
| rmixnorm | Man page |
| rndown5 | Man page |
| rowcol.to.index | Man page |
| rpois.max | Man page |
| rpois.trunc | Man page |
| rpower | Man page |
| rsymexp | Man page |
| run.growthbin.manyspp | Man page |
| run.growthfit.bin | Man page |
| save.searchpath | Man page |
| saveParamFile | Man page |
| se.kurtosis | Man page |
| se.skewness | Man page |
| segmentPt | Man page |
| selectrandomquad | Man page |
| selectrandomquad2 | Man page |
| selectrandomquad3 | Man page |
| setsize | Man page |
| simple | Man page |
| simple.model | Man page |
| skewness | Man page |
| solve_topo | Man page |
| some_but_not_all_is_na | Man page |
| split_data | Man page |
| spmean.mort.abundGibbs | Man page |
| spparea.sq | Man page |
| standardreg.no.int | Man page |
| startCTFS | Man page |
| strip_path | Man page |
| strip_rd | Man page |
| summaryMCMC | Man page |
| summaryModelMCMC | Man page |
| sumsq | Man page |
| testmcmcfunc | Man page |
| tojulian | Man page |
| torus.shift | Man page |
| trim | Man page |
| trim.growth | Man page |
| unidentified.species | Man page |
| vectToCommas | Man page |
| wavelet.allsp | Man page |
| wavelet.bivariate | Man page |
| wavelet.univariate | Man page |
| weibull.mean.3param | Man page |
| weibull.median.3param | Man page |
| weibull.sd.3param | Man page |
| which.allnonNA | Man page |
| which.maxNAs | Man page |
| which.nonNA | Man page |
| which.vmatch | Man page |
| wideEnoughBins | Man page |
| wsgdata_dummy | Man page |
| xydist | Man page |
| xydistmat | Man page |
| xydistvect | Man page |
