| abundance | Abundance or basal area dividing data with 1 or 2 categorical... |
| abundanceperquad | Abundance, basal area, or agb of every species by quadrat. |
| abundance.spp | Abundance of trees by species and DBH classes. |
| abund.manycensus | Collect abundances of all species across several censuses. |
| abundmodel.fit | Simply return the modeled histogram for any set of... |
| addBinParam | Given parameters for a model with N linear bins, creates... |
| agb.dbhmodel | Calculates biomass from density and diameter, without height. |
| AGB.dbtable | This function looks up the database named AGB in the MySQL... |
| AGB.ind | Above ground biomass (agb) based on one of the Chave... |
| agb.model | Calculates biomass from density, height, and dbh. |
| AGB.tree | AGB of each tree, grouping all stems of one tree and adding... |
| allquadratslopes | Calculates the slope of all quadrats in a plot. |
| angleBisector | Given 3 sets of coordinates defining two line segments... |
| Annuli | Total area in a series of annuli, summed over all individuals... |
| are.ptsinside | Check if points belong to quadrat. |
| args_of | Title |
| arrangeParam.Gibbs | Used in the loop of a Gibbs sampler, setting parameters not... |
| arrangeParam.Gibbs.2D | Used in the loop of a Gibbs sampler, setting parameters not... |
| arrangeParam.llike | Used in likelihood function of a Gibbs sampler. Allows any of... |
| arrangeParam.llike.2D | Used in likelihood function of a Gibbs sampler for lmerBayes,... |
| assembleBinOutput | Use the list output from piecewise regression (growthfit.bin)... |
| assemble.demography | Reformat the output from demographic functions from list to... |
| AssignDiag | A way to assign the diagonals of a matrix that can handle... |
| asymp.ht | Asymptote for y as a function of x. |
| asymp.ht.fixmax | Same formulation, but the asymptote is fixed, so only two... |
| asymptote.exp | A 3-parameter function which asymptotes as x->infinity. |
| attach_if_needed | Deprecated. See section _Good practice_ in '?attach'. To use... |
| autoregression | Autocorrelation with a given lag of a vector y. |
| ba | Basal area of trees. |
| bad.asymexp.param | For either the Gaussian, or asymexp, the SD parameters must... |
| bad.asympower.param | The 3 parameters submitted to hyper.abundGibbs have to be... |
| bad.binparam | This prevents the bin parameters from moving outside the x... |
| bad.binsdpar | bad.binsdpar |
| BadParam | This is a default for model.xy, never returning TRUE. To use... |
| bad.paretopar | Test whether parameters for the Pareto distribution are... |
| badSD | badSD arrangeParam.llike.2D Used in likelihood function of a... |
| basum | Returns the basal area summed over all submitted dbhs. |
| beta.normalized | Normalzing beta.total. No longer used. beta.normalized... |
| betaproduct | This is equivalent to the normal product above.betaproduct... |
| beta.total | A beta distribution on the interval xmin to xmax, instead of... |
| binGraphManySpecies | Graph AGB growth and model fit of many species overlaid. |
| binGraphManySpecies.Panel | Make a graph, 4 panels, of AGB growth and model fit of many... |
| binGraphSampleSpecies | Make a single graph, 4 panels, of AGB growth and model fit. |
| biomass.change | Finds biomass in two censuses and change between them. |
| biomass.CTFSdb | Biomass for trees and stems using dbh allometry. |
| biomass.growth | Calculate change in biomass (agb). |
| bootconf | A simple calculation of confidence limits based on the SD of... |
| bootstrap.corr | Running bootstrap on a correlation. Any columsn can be chosen... |
| border.distance | Distance from a point to the nearest boundary of a rectangle... |
| calcalpha | Calculates alpha from a stem and species count submitted... |
| calc.directionslope | This runs equations 1-3 of Seibert &... |
| calc.gradient | Calculate flow using Seibert & McGlynn algorithm. |
| calcMortIndivTable | Calculate mortality rate per species per census interval... |
| CalcRingArea | Given a dataframe that includes gx, gy coordinates, and a... |
| calcS.alpha | Number of species in a sample of N individuals, given... |
| calcslope | Given the z-coordinate of 3 points in 3D space whose x-y... |
| calculateBinModel.AIC | Calculate AIC of the model, using various log(likelihood)... |
| calculateBinModel.bestpred | Calculate mean predicted value at every x using every one of... |
| calculateBinModel.BIC | Calculate Bayes Information Criteria using Wikipedia formula. |
| cartesian.to.polar | Convert Cartesian coordinates to polar. Returns a dataframe... |
| center.predictors | Transform all data by subtracting a constant, either the... |
| charlocate | Finds position of a substring needle inside a longer string... |
| Chave.AGB | The Chave 2005 Oecologia model for calculating biomass from... |
| CI | Confidence limits (quantiles) from a vector at specified... |
| circle | Calculates points on a circle. |
| circlearea | Area of a circle of radius r. |
| clean.demography | Keep or clean rows outputed by mortality, growth, or... |
| coldata.to.imagemat | Map response variables using 'contour()', 'image()', and... |
| colMedians | For convenient medians, like colMeans.colMedians midPoint... |
| compare.growthbinmodel | Calculates various metrics of fit: DIC, BIC, AIC. |
| complete.plotmap | Map every individual. |
| constant | A function to return a constant at all predictors x. |
| constant.bin | A model like piecewise regression (linearmodel.bin), but y is... |
| constant.linear | A model which is constant for x<lim, and linear for x>lim.... |
| convert.factor | Converts from factors to character. |
| convert.rowcol | Convert an integer to a character, with a single leading zero... |
| CountByGroup | Groups a dataframe by one or more columns (named by... |
| countEmpty | Counts vector elements that are NA or a string of no... |
| countNA | Counts vector elements that are NA.countNA countEmpty Counts... |
| countone | Counts vector elements exactly one.countone countNA Counts... |
| countpresent | Counts vector elements > 0. See countspp as well.countpresent... |
| countspp | Returns the number of elements in a numeric vector > 0.... |
| countUnique | Count the number of unique elements in a vectorcountUnique... |
| countzero | Counts vector elements exactly zero.countzero countone Counts... |
| coverage.diag | Draws a diagonal across a plot. |
| covTocorr | Convert covariance matrix to correlation matrix. Each element... |
| create.fulldate | Converts a vector of date character strings in any format to... |
| create.fulldate.split | Converts the MySQL date format by splitting on the hyphen (or... |
| create.neighbordata | Calculates the mean density in neighboring quadrats for every... |
| ctfs-package | ctfs: Tools for the Analysis of Forest Dynamics |
| CTFSplot | Deprecated. Use <DATA> from Barro Colorado Island with... |
| cumul.above | Seek x at which the curve passes through a given y. |
| dasymexp | Probability distributions for a folded but asymmetrical... |
| dasymnorm | Probability distributions for an asymmetrical Gaussian. |
| dasympower | A bilateral power distribution, centered at center, decaying... |
| dbeta.reparam | Reparameterize beta distribution as a function of its mean... |
| DBHtransition | Calculates a transition matrix of individuals by diameter... |
| dbinomrev | A version of dbinom in which parameters are submitted in a... |
| d.calcS.alpha | The derivative for use in Newtons methodd. |
| default.badpar | None given.default.badpar bad.paretopar Test whether... |
| defineBinBreaks | This finds divisions of over the vector size which produce... |
| define.graphwindow | Define an export device for a graph, based on the argument... |
| defineSDpar | For default SD parameters, if nothing else works. Choose the... |
| density_ind | Create a vector of wood density for each individual tree... |
| detachfiles | detachs from the searchpath files matching a submitted vector... |
| dexp.sin | Four-parameter exponential sin, as a probability... |
| dgammadexp | PDF by adding a gamma distribution to a symmetrical... |
| dgamma.mean | A version of dgamma where the parameters are ordered so that... |
| dgamma.meansd | Probability distribution of gamma, parameterized with mean... |
| dgammaMinusdexp | The PDF of a gamma distribution minus a negative exponential... |
| dgammaPlusdexp | The PDF of the sum of gamma and negative exponential... |
| dgamma.scale | Like above, but with scale as the first... |
| discrete.model | A model for a numeric response to a single discrete... |
| discrete.mortmodel | A model for mortality as a function of a single discrete... |
| distance | Distance from one quadrat to a second quadrat. |
| distance.to.side | Called from imageJ.to.lxly where for each point, distance to... |
| ditch | Detaches all files at one or more search positions; v can be... |
| dmixnorm | Mixed normal distribution. |
| dnormprod0 | Probability density of product of two normal variates, both... |
| dnormrev | Reverse the order of parameters to dnorm. |
| doublenormal | Simulate draws from a double normaldoublenormal. |
| dpois.max | A probability distribution which is simply a curtailed... |
| dpois.maxtrunc | A zero-truncated Poisson distribution with a ceiling... |
| dpois.rearrange | This rearranges dpois so that it works on a single vector,... |
| dpois.trunc | A zero-truncated Poisson distribution. dpois.trunc... |
| dpower | A probability distribution defined by a power function. There... |
| draw.axes | Add axes to a graph, with ticks spaced by the vector div. |
| drawrectangle | Draw a rectangle given a matrix or dataframe of 4 x-y... |
| drp | A version of drop which includes as.matrix. Without it, drop... |
| dsymexp | Probability distribution for a folded, symmetrical... |
| dweibull.3param | PDF of three-parameter Weibulldweibull.3param... |
| elev.to.list | Convert a dataframe of coordinates and elevation into a list. |
| ellipse | Equation for (half) a canonical ellipse fullellipse Creates a... |
| enoughSamplePerBin | Test whether the number of elements in a vector x between... |
| exclude.unidentified | A more specialized version of unidentified species. It... |
| exp_2par | An exponential distribution with an asymptote. @details Name... |
| explode | Split a single (atomic) character variable into sections,... |
| exponential.sin | Five-parameter exponential sinexponential.sin pexp.sin CDF of... |
| expon.model | Exponential model, y = a exp(b1_x1 + b2_x2) for any number of... |
| extract.growthdata | Extract growth rates from plot databases and 2 censuses. |
| fill.1dimension | Filling a 1D array resulting from tapply. Same as... |
| fill.dimension | This function fills out an array of 2 dimensions, adding... |
| findborderquads | Given a quadrat index, calculate indices of neighboring... |
| find.climits | Calculate confidence limits around a number of deaths. |
| findneighborabund | For every quadrat, finds neighboring quadrats and returns... |
| find.nonNA | Returns the first value of a vector x which is not... |
| find.xaxis.hist | Given an abundance fit and x axis range and divisions, return... |
| fit.beta.normal | Finding a normal distribution which most closely fits a given... |
| fit.logistic | A function to fit a set of data y, observed at the vector x,... |
| fitnorm | Fitting a normal distribution to data Parameters are a mean... |
| fit.pdf | Fit a random variable x to any submitted probability... |
| fitSeveralAbundModel | Run model.littleR.Gibbs for a series of census databases. |
| fromjulian | Convert calendar dates from julian dates. |
| full.abundmodel.llike | With the table of abundances, hyper-parameter estimates, and... |
| fullcircle | Create a dataframe for a full circle. |
| fullellipse | Creates a dataframe for a full ellipse. |
| full.likelihood.lmerBayes | Likelihood for any complete set of parameters. |
| fullplot.imageJ | Convert pixels to coordinates within a quadrat. |
| full.xygrid | Create a complete of points x-y, given the sequence of unique... |
| get.filename | This sets a name for outputting a map (or any graph) to a... |
| getquadratname | Convert x, y coordinates and plot dimensions into 4-character... |
| getsmallerquads | Convert indices from larger to smaller quadrats. |
| getTopoLinks | This is solely for use by solve_topo. It finds all points... |
| Gibbs.normalmean | The standard Gibbs sampler for a normal distribution with... |
| Gibbs.normalvar | Gibbs draw for the variance of a normal distribution... |
| Gibbs.regsigma | Updates the regression standard deviation (used in... |
| Gibbs.regslope | Updates the regression slope (used in... |
| graph.abundmodel | Output histograms of little.r across species, observed and... |
| graphFilledBand | Fill the area between two curves on a graph. |
| graph.growthmodel | Graph growth rates and model fit. |
| graph.growthmodel.spp | Use output of growth.flexbin to graph observed growth and... |
| graph.modeldiag | Graph diagnostics of model.xy. |
| graph.mvnorm | Plot contours for an mvnorm, with parameters submitted as a... |
| graph.outliers | Plot outliers overlaid on the model and full data for all... |
| graph.outliers.spp | Pass the output of extract.growth with every individual's... |
| graph.quadrats | Plot a series of quadrats with corners xlo, ylo, xhi, yhi. |
| growth | Annual Growth Rates by Categories. |
| growth.biomass.indiv | Like growth.indiv but based on agb growth, not dbh growth. |
| growth.dbh | Calculates forest-wide growth in given dbh categories. |
| growth.eachspp | Calculate growth for each species in given dbh categories. |
| growth.flexbin | Fit a regression line through log growth against log dbh,... |
| growth.indiv | Table growth rate of every individual both relative and... |
| gsp | Returns one of the objects at a given search position. This... |
| gxgy.to.hectindex | Converts GX GY Coordinates to a Hectare Number. |
| gxgy.to.index | Assign any location(s) a single index identifying the... |
| gxgy.to.lxly | Calculate local x and y coordinates from global coordinates. |
| gxgy.to.quad | Calculate a quadrat name from gy-gy. |
| gxgy.to.rowcol | Returns row and column for any set of coordinates. |
| harmonic.mean | Harmonic mean of a vector x. |
| hist_compare | Compares two histograms with a Kolmogorov approach. @details... |
| hyper.abundGibbs | Likelihood function for hyperparameters of abundance model,... |
| hyper.mortGibbs | Likelihood function for logMu and logSD, given the species... |
| IfElse | A Version of 'base::ifelse()'. |
| image_dataframe | Creates a color response map based on columnar data. |
| imageGraph | Maps a response variable with Rs contour or image functions,... |
| imageJ.to.lxly | Convert map pixels from digitzing program to plot... |
| index.to.gxgy | Calculate the x and y coordinates given the quadrat index. |
| index.to.rowcol | Calculate the row and column given the quadrat index. |
| individual_grow.table | Create a table of individual trees and their growth over two... |
| individual_mort.table | Table individual trees and their survival status over two... |
| inside.rect | Determines whether any of the 4 corners of one rectangle are... |
| insideRectangle | Checks a vector of coordinates x, y to return which are... |
| intersection.line.curve | Finds the points where a straight line, given lines as... |
| intersection.of.lines | Finds the point where 2 lines intersect, given lines as 2... |
| invlogit | Inverse logit transformation, turns a logit back into a... |
| is.between | Check whether a point x,y falls between two other points. The... |
| is.leap | Deprecated. Is a year a leap year? |
| is_na_row | Detect rows in a data frame full of NA (accross columns). |
| is.odd | A trivial function to test whether numbers (scalar or vector)... |
| ispt.inside | Check a single pt (x and y) against a large number of... |
| kurtosis | Sample kurtosis. The biased portion is the population... |
| left | Leftmost n characters of a string. |
| leftbut | Returns the leftmost characters of a string, excluding the... |
| linear.model | A simple linear model, where the first parameter is... |
| linearmodel.bin | Multiple bin model predicting y as a function of x in several... |
| linearmodel.bin.set | This does the work of calculating predicted values at each... |
| linear.model.ctr | A simple linear model, where the first parameter is... |
| linear.mortmodel | A model for mortality as a function of one or more... |
| line.intersection.pts | Finds the point where 2 lines intersect, given each line as 2... |
| llike.GaussModel | This is for model.xy. Generate a likelihood for 'model.xy()'. |
| llike.GaussModelSD | This is for model.xy. Take the function for the SD, its... |
| llike.linearbin.optim | This is for optim, a single function taking all parameters at... |
| llike.model.lmer | A llikelihood function for one set of parameters, for a... |
| lmerBayes | A Metropolis MCMC version of lmer. |
| lmerBayes.hyperllike.mean | This is the hyper-likelihood for updating the hypermeans,... |
| lmerBayes.hyperllike.sigma | This is the hyper-likelihood for updating the covariances. It... |
| lmerMortFixedTime | A model for mortality as a function of a single predictor... |
| lmerMortLinear | A linear model of an annual mortality parameter, which is... |
| load.species | A function for extracting a single speciesdataframe from the... |
| logical.grep | A form of grep returning logical instead of indices... |
| logistic.ctr | Logistic function with intercept parameterization centering... |
| logistic.inter | Logistic function with intercept parameterization (i.e.,... |
| logisticmodel.bin | Multiple bin model predicting y as a function of x, where... |
| logistic.multiplicative | Logistic with a pair of parameters for each x; y=product of... |
| logistic.power | This is the Gaussian logistic function, where logit is a... |
| logistic.power.mode | This is the Gaussian logistic function, where logit is a... |
| logistic.power_simple | This is a mixture of logistic and logistic-standard models.... |
| logistic.standard | This is standard logistic function, but with asymptote and... |
| logistic.sum.squares | Sets a prediction based on a generalized logistic, then... |
| logit | Logit transformation for a probability >0 and < 1logit... |
| log_model | Logarithmic model, y = a + b1 log(x1) + b2 log(x2) for any... |
| lxly.to.p5 | Calculate p5x5 from local or within-quadrat coordinates for a... |
| majoraxisreg | A major axis regression with parameters fitted by optim. |
| majoraxisreg.no.int | Major axis regression with no intercept. Only a slope is... |
| make.CredIntervalVect | Take a vector y having mean then lower and upper credible... |
| map | Draw map of one or more species from one plot. |
| map1species | Map a single species. |
| map2species | Map 2 species to a 2-panel pdf. |
| maptopo | Draws contours on a plot map. |
| match.dataframe | Matches two dataframes using two or more columns. Rs function... |
| merge_data | Combine many dataframes as elements of a list into a single... |
| mergeParam | Merges a list of parameter matrices into one large matrix.... |
| metrop1step | Takes a single metropolis step on a single parameter for any... |
| metrop1step.discrete | A version for metrop1step where the alternative values are... |
| midPoint | Midpoint of any vector.midPoint Source code and original... |
| minum.beta.normal | Function to be minimized for fitting normal to... |
| minum.mixnorm | Fit a mixture of 2 normals. |
| minum.normal | The likelihood function for use by fitnorm.minum.normal... |
| minum.perpdist | The sum of squares used by majoraxisreg.minum.perpdist... |
| modelBayes | A Metropolis MCMC version for any modeling y~x, without... |
| model.littleR.Gibbs | The main function for fitting the probability distribution of... |
| model.xy | Bayesian routine for fitting a model to y given x. |
| MONTHNAMES | Object assumed to be crucial. In 'utilities.R, the original... |
| mortality | Mortality, forest-wide or based on one or two categories. |
| mortality.calculation | Calculate mortality rate and confidence limits. |
| mortality.dbh | Calculate forest-wide mortality in given dbh categories. |
| mortality.eachspp | Calculate mortality for each species in given dbh categories. |
| mvrnormRC | From a variance-covariance matrix, output normal variates... |
| NDcount | Count of neighbors within radius r with edge effect... |
| NeighborDensities | Total number or basal area of conspecific and heterospecific... |
| neighbors | Find proportion of neighboring quadrats in which a species is... |
| nhd | A version of head with only 6 columns shown.nhd TextToRdata... |
| normalproduct | Product of 2 normal distributions, the first at x and the... |
| order.bynumber | Returns ordering of a character vector with any numbers... |
| order.by.rowcol | Reorder rows and columns of a matrix so they are sorted as if... |
| overlay.growthbinmodel | Show model fits for 1, 2, 3, and 4 bins on each species. |
| parallel.line | Slope and intercept of a line parallel to another known line. |
| partialcirclearea | Area of a circle of radius r that is inside a rectangular... |
| paste_path | Paste the path with the content of a directory. |
| pdf.allplot | Export a pdf with one or more species maps. |
| perpendicular.distance | Distance from a point to a line (so its the perpendicular... |
| perpendicular.line | Slope and intercept of the line perpendicular to another... |
| pexp.sin | CDF of four-parameter exponential sinpexp.sin mvrnormRC... |
| plot_wavelet | Function to plot the wavelet variance from the output of the... |
| png.allplot | Export species maps as png. |
| polar.to.cartesian | Convert polar coordinates to Cartesian. |
| pop.change | Change in abundance, basal area, or agb in two censuses. |
| pop.change.dbh | Change between two censuses in abundance or basal area. |
| pospower | Raise to any power, but with negative numbers converted to... |
| predht.asym | An allometric model predicting an asymptote at large size. |
| print_all | Print all rows of a tibble or tbl_df. |
| prob.N1 | Probability of observing N2 given N1 (little.r distributed... |
| pst | A version of paste with sep. |
| psymexp | The CDF for the symmetric exponential.psymexp rsymexp Drawing... |
| pts.to.interceptslope | Returns intercept and slope of a line given two pairs of... |
| pweibull.3param | CDF of three-parameter... |
| qasymexp | Quantiles of dasymexp y is the vector of desired quantiles; c... |
| qasympower | Quantiles from the bilateral power distribution, dasympower.... |
| quadslope | Given the elevation at four corners of a square of... |
| quad.to.gxgy | Convert quadrat names into x-y coordinates. |
| randomElement | Return a random element from a vector randomElement... |
| randomRow | Return a random row from a dataframe. |
| rarefy.diversity | Species number in a random subsample of 's' individuals. |
| rasterize | Calculate count, basal area or agb per quadrat. |
| rasympower | Random draws from the bilateral power distribution,... |
| read_csv_alt | Read a csv file from two alternative paths. |
| readelevdata | Read a table of elevation data into a matrix appropriate for... |
| rearrangeSurveyData | Takes a table of survey sightings with columns of x and y... |
| recalculate.lmerBayesllike | Walk through entire chain of parameters to calculate full... |
| recruitment | Calculate recruitment rates. |
| recruitment.eachspp | A wrapper to calculate recruitment for each species. |
| regression.Bayes | Regression using the Gibbs sampler, with just one x variable. |
| regress.loglog | Performs regression and graphs in a convenient way. |
| regress.plot | Regression coefficients, probabilities and graph. |
| regslope | Returns slope of regression as single scalar (for use with... |
| regslope.noint | Returns slope of regression with no intercept as single... |
| regsum | For a polynomial regression, find x or y at y's peak or... |
| resetParam | This starts a new 3D parameter array whose first element is... |
| residual.llike.lmerBayes | Calculate likelihood of residual standard deviation, given... |
| residual.llike.modelBayes | Calculate likelihood of residual standard deviation. |
| restoreParamFile | Reverses the steps of saveParamFile, back to a 3D array. This... |
| rgamma.meansd | Random draws of gamma, parameterized with mean and sd. |
| right | Returns the rightmost n characters of a stringright rightbut... |
| rightbut | Returns the rightmost characters of a string, excluding the... |
| RipUvK | Ripleys K using splancs. |
| rmixnorm | Random draw on the mixed normal distribution.rmixnorm... |
| rm_na_row | Remove rows from data frame or matrix full of NA. |
| rndown5 | Rounds a numeric value to the next lowest multiple of... |
| rowcol.to.index | Takes row and column numbers and identifies the quadrate... |
| rpois.max | Random draws on dpois.maxrpois.max rpois.trunc Random draws... |
| rpois.trunc | Random draws on dpois.trunc. |
| rpower | Random draws based on the integral.rpower dasympower A... |
| rsymexp | Drawing a random variate on the symmetric exponential. |
| run.growthbin.manyspp | Run the model to fit growth rate in bins for many species,... |
| run.growthfit.bin | Find best fits for linearmodel.bin, with one set of data and... |
| saveParamFile | This saves a run of the full parameters into a text file,... |
| save.searchpath | Save functions in position n to a file already attached. |
| SectionCorrection | Correct coordinates, making them from 0 to 20. |
| segmentPt | Draw a line segment between two points. |
| se.kurtosis | Standard error of kurtosis. Depends only on sample size.... |
| selectrandomquad | Draws rectangular quadrats in a plot at random. |
| se.skewness | Standard error of skewness. se.skewness kurtosis Sample... |
| setsize | An internal function, called by 'map()' to choose size of... |
| simple | An even more trivial model to return x unchanged. The... |
| simple.model | A trivial model to return a different value at every x. If... |
| skewness | Sample skewness. The biased portion is the population... |
| solve_topo | This is based on the problem and solution outlined in my book... |
| some_but_not_all_is_na | Predicate to determine if some but not all elements of a... |
| split_data | Split a dataframe into a list by any vector. |
| spmean.mort.abundGibbs | Likelihood function for a species mean (a scalar, one species... |
| spparea.sq | Number of species in replicated, randomly-placed quadrats of... |
| standardreg.no.int | Standard regression with no intercept.standardreg.no.int... |
| startCTFS | Function to source all components of CTFS R package. Load all... |
| StringToVect | Converts a character string into a vector of individual... |
| strip_path | Stip the bare file name when its sorrounded by references of... |
| strip_rd | Remove ending .Rd or .rd. |
| summaryMCMC | Summarize calculations based on the full Gibbs sampler. |
| sumsq | A trivial function used in minimizing sums of squares.sumsq... |
| testmcmcfunc | Deprecated. Test mcmc1step. |
| TextToRdata | Reads a tab-delimited text file and save as rdata. |
| tojulian | Convert calendar dates to Julian dates. |
| torus.shift | Creates a torus-shifted quadrat topographic dataset. |
| trim | Trims leading and trailing blanks from a vector of character... |
| trim.growth | Exclude growth rates |
| unidentified.species | Takes a string of species names or codes and returns a... |
| vectToCommas | Given a vector of character variables, collapse into a single... |
| wavelet.allsp | Wavelet variance curves for all species in one plot. |
| wavelet.bivariate | Bivariate wavelet variance using furier transforms. |
| wavelet.univariate | Univariate wavelet variance using furier transforms. |
| weibull.mean.3param | Mean of three-parameter Weibullweibull.mean.3param... |
| weibull.median.3param | Median of three-parameter Weibullweibull.median.3param... |
| weibull.sd.3param | SD of three-parameter Weibullweibull.sd.3param dexp.sin... |
| which.allnonNA | Finds all values of a vector which are not NA. Fills out a... |
| which.maxNAs | An unfortunate bug in which.max: if all elements are NA, it... |
| which.nonNA | Returns the first index at which a vector x is not... |
| which.vmatch | Finds which subsequent element of a vector matches the first... |
| wideEnoughBins | Test whether all the bin widths exceed a minimum. MINBIN=0.1... |
| wsgdata_dummy | Create a dummy wsgdata data set |
| xydist | Distance between two pairs of x-y coordinates. Input can be... |
| xydistmat | Distance between two x-y coordinates. |
| xydistvect | Distance between two x-y coordinates, but accepts each set of... |
