fortunatobianconi/methylkit: DNA methylation analysis from high-throughput bisulfite sequencing results

methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing. It also has functions to analyze base-pair resolution 5hmC data from experimental protocols such as oxBS-Seq and TAB-Seq. Perl is needed to read SAM files only.

Package details

AuthorAltuna Akalin, Matthias Kormaksson, Sheng Li
Bioconductor views DNAMethylation
MaintainerAltuna Akalin <[email protected]>
LicenseArtistic-2.0
Version0.9.2.0
URL http://code.google.com/p/methylkit/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("fortunatobianconi/methylkit")
fortunatobianconi/methylkit documentation built on May 16, 2019, 1:51 p.m.