methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing. It also has functions to analyze base-pair resolution 5hmC data from experimental protocols such as oxBS-Seq and TAB-Seq. Perl is needed to read SAM files only.
|Author||Altuna Akalin, Matthias Kormaksson, Sheng Li|
|Maintainer||Altuna Akalin <[email protected]>|
|Package repository||View on GitHub|
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