tileMethylCounts-methods: Get methylated/unmethylated base counts for tilling windows
In fortunatobianconi/methylkit: DNA methylation analysis from high-throughput bisulfite sequencing results
Description
Usage
Arguments
Value
Examples
Description
The function summarizes methylated/unmethylated base
counts over tilling windows accross genome. This function
can be used when differential methylated analysis is
preferable to tilling windows instead of base pairs.
Usage
1
tileMethylCounts(object,win.size=1000,step.size=1000,cov.bases=0)
Arguments
object
methylRaw,
methylRawList or methylBase
object containing base pair resolution methylation
information
win.size
an integer for the size of the tiling
windows
step.size
an integer for the step size of tiling
windows
cov.bases
minimum number of bases to be covered in
a given window
Value
methylRaw,methylBase or
methylRawList object
Examples
1
2
3
4
data(methylKit)
tiled.methylRaw=tileMethylCounts(object=methylRawList.obj,win.size=1000,
step.size=1000,cov.bases=0)
fortunatobianconi/methylkit documentation built on May 16, 2019, 1:51 p.m.
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Description Usage Arguments Value Examples
Description
The function summarizes methylated/unmethylated base counts over tilling windows accross genome. This function can be used when differential methylated analysis is preferable to tilling windows instead of base pairs.
Usage
1 | tileMethylCounts(object,win.size=1000,step.size=1000,cov.bases=0)
|
Arguments
object |
|
win.size |
an integer for the size of the tiling windows |
step.size |
an integer for the step size of tiling windows |
cov.bases |
minimum number of bases to be covered in a given window |
Value
methylRaw,methylBase or
methylRawList object
Examples
1 2 3 4 | data(methylKit)
tiled.methylRaw=tileMethylCounts(object=methylRawList.obj,win.size=1000,
step.size=1000,cov.bases=0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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