annotationByGenicParts-methods: Get distance to nearest TSS and gene id from...
In fortunatobianconi/methylkit: DNA methylation analysis from high-throughput bisulfite sequencing results
Description
Usage
Arguments
Value
Examples
Description
This accessor function gets the nearest TSS, its distance
to target feature,strand and name of TSS/gene from
annotationByGenicParts object
Usage
1
Arguments
x
an
annotationByGenicParts object
Value
a data.frame containing row number of the
target features,distance of target to nearest TSS,
TSS/Gene name, TSS strand
Examples
1
2
3
4
5
data(methylKit)
gene.obj=read.transcript.features(system.file("extdata", "refseq.hg18.bed.txt", package = "methylKit"))
ann=annotate.WithGenicParts(methylDiff.obj, gene.obj)
df=getAssociationWithTSS(ann)
head(df)
fortunatobianconi/methylkit documentation built on May 16, 2019, 1:51 p.m.
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Description Usage Arguments Value Examples
Description
This accessor function gets the nearest TSS, its distance to target feature,strand and name of TSS/gene from annotationByGenicParts object
Usage
1 |
Arguments
x |
an
|
Value
a data.frame containing row number of the
target features,distance of target to nearest TSS,
TSS/Gene name, TSS strand
Examples
1 2 3 4 5 | data(methylKit)
gene.obj=read.transcript.features(system.file("extdata", "refseq.hg18.bed.txt", package = "methylKit"))
ann=annotate.WithGenicParts(methylDiff.obj, gene.obj)
df=getAssociationWithTSS(ann)
head(df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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