select-methods: selects rows from of methylKit objects

In fortunatobianconi/methylkit: DNA methylation analysis from high-throughput bisulfite sequencing results

Description

The function returns a subset of data contained in the methylKit objects.

Usage

  select(x,i)

Arguments

x	an methylBase,methylRaw or methylDiff object
i	a numeric or logical vector. This vector corresponds to bases or regions contained in methylKit objects.The vector is used to subset the data.

Value

a methylBase,methylRaw or methylDiff object depending on the input object.

Examples

data(methylKit)
 # selects first hundred rows, returns a methylRaw object
subset1=select(methylRawList.obj[[1]],1:100)

# selects first hundred rows, returns a methylBase object
subset2=select(methylBase.obj,1:100)

# selects first hundred rows, returns a methylDiff object
subset3=select(methylDiff.obj,1:100)

fortunatobianconi/methylkit documentation built on May 16, 2019, 1:51 p.m.