plot.gsea1: Plot results from a one-tailed GSEA

In fossbert/binilib: Carlo's little helper

Description

This function generates a plot

Usage

## S3 method for class 'gsea1'
plot(
  gsea1,
  color = "cornflowerblue",
  main = "",
  plotSignature = FALSE,
  signatureNames = NULL,
  signatureType = NULL,
  ledge = TRUE,
  fixY = NULL,
  ...
)

Arguments

gsea1	gsea1 object as returned from gsea1T
color	character or integer indicating color choice (defaults to cornflowerblue)
main	Character vector given as argument for convenience
plotSignature	Logical whether to include a graph on the signature (e.g. t-statistics)
signatureNames	Character vector indicating the conditions being compared. Defaults to NULL. Otherwise a charater vector of length two.
signatureType	Character to indicate the type of gene level statistic (e.g. t-statistic).
ledge	logical whether to plot the leading edge line
fixY	numeric vector specyfying y-axis limits, defaults to NULL
...	Given for compatibility to the plot generic function

Value

Nothing, a plot is generated in the default output device

fossbert/binilib documentation built on April 23, 2021, 10:31 p.m.