plot.gsea2regulon: Plot 2-tailed enrichment results

In fossbert/binilib: Carlo's little helper

Description

This function generates a plot of the GSEA running sums of two gene sets on a given signature.

Usage

## S3 method for class 'gsea2regulon'
plot(
  gsea2regulon,
  color = c("cornflowerblue", "salmon"),
  legend = TRUE,
  legNames = c("Targets", "pos", "neg"),
  main = "",
  plotSignature = FALSE,
  signatureNames = NULL,
  signatureType = NULL,
  ledge = TRUE,
  fixY = NULL,
  ...
)

Arguments

gsea2regulon	gsea2regulon object as returned from gsea_regulon
color	Vector of two components indicating the colors for the negative and positive parts of the regulon
legend	Logical on whether to draw a legend explaining the two parts of the regulon
legNames	Character, defaults to Targets, pos and neg
main	Character vector given as argument for convenience
plotSignature	Logical whether to include a graph on the signature (e.g. t-statistics)
signatureNames	Character vector indicating the conditions being compared. Defaults to NULL. Otherwise a charater vector of length two.
signatureType	Character to indicate the type of gene level statistic (e.g. t-statistic).
ledge	logical whether to plot the leading edge line
fixY	numeric vector specyfying y-axis limits, defaults to NULL
...	Given for compatibility to the plot generic function

Value

Nothing, a plot is generated in the default output device

fossbert/binilib documentation built on April 23, 2021, 10:31 p.m.