Description Usage Arguments Value
View source: R/GSEA_Subramanian.R
This function performs GSEA for the negative and positive targets, respectively, of a regulatory gene.
1 2 3 4 5 6 | gsea_regulon(
signature,
regulon,
sorting = c("decreasing", "increasing"),
weight = 1
)
|
signature |
Named vector of gene-level statistics (preferably t-statistics) |
regulon |
list object as returned by aracne2regulon (viper package)
|
sorting |
character indicating how to sort the signature (default is decreasing). Passed to gsea1T. |
w |
weight for each gene-level statistic (default = 1) |
a list object containing for each gene set:
input signature
enrichment score positive targets
enrichment score negative targets
enrichment score positive targets index
enrichment score negative targets index
running sum for positive targets
running sum for negative targets
indices of the positive targets in the signature
indices of the negative targets in the signature
gene identifiers of the leading edge for the positive targets
gene identifiers of the leading edge for the negative targets
indices of the leading edge gene set members - positive targets
indices of the leading edge gene set members - negative targets
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.