randomize_regulon: Generate a randomized network
In fossbert/binilib: Carlo's little helper
Description
Usage
Arguments
Value
View source: R/viper-helpers.R
Description
The procedure applies the Maslov-Sneppen procedure, i.e. substitutes regulatory protein targets
with the same number of randomly assigned targets, thus producing a random program topology
while preserving the number of target genes of each RP.
Usage
1
randomize_regulon(regulon, universe = NULL, seed = 42)
Arguments
regulon
regulon object - see output of viper::aracne2regulon
universe
set to NULL, can be supplied to provide the gene universe to chose targets from
seed
before random sampling
Value
regulon with randomized targets and preserved topology
fossbert/binilib documentation built on April 23, 2021, 10:31 p.m.
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Description Usage Arguments Value
View source: R/viper-helpers.R
Description
The procedure applies the Maslov-Sneppen procedure, i.e. substitutes regulatory protein targets with the same number of randomly assigned targets, thus producing a random program topology while preserving the number of target genes of each RP.
Usage
1 | randomize_regulon(regulon, universe = NULL, seed = 42)
|
Arguments
regulon |
regulon object - see output of viper::aracne2regulon |
universe |
set to NULL, can be supplied to provide the gene universe to chose targets from |
seed |
before random sampling |
Value
regulon with randomized targets and preserved topology
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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