DEtransform: Variance stabilization transformation for RNAseq data

In fossbert/binilib: Carlo's little helper

Description

This function stabilizes the variance, transform the data and add shot noise to the data

Usage

DEtransform(emat, fitType = c("parametric", "local"), noise = TRUE, seed = 42)

Arguments

emat	matrix containing the raw counts, with genes in rows and samples in columns
fitType	Character string indicating the type of fit for the dispersion (see DESeq::estimateDispersions)
noise	Logical, indicating whether to add a shot of random noise to the data (splitting ties)
seed	Integer indicating the fixed seed for random numbers, 0 for not setting the seed

Value

Expression matrix

fossbert/binilib documentation built on April 23, 2021, 10:31 p.m.