getLodColIndices: Get LOD column indices.

In gact/shmootl: QTL Analysis Utilities for Yeast

Description

Get LOD column indices.

Usage

getLodColIndices(x, lodcolumns = NULL, strict = FALSE)

## S3 method for class 'mapframe'
getLodColIndices(x, lodcolumns = NULL, strict = FALSE)

## S3 method for class 'scanone'
getLodColIndices(x, lodcolumns = NULL, strict = FALSE)

## S3 method for class 'scanonebins'
getLodColIndices(x, lodcolumns = NULL, strict = FALSE)

## S3 method for class 'scanoneperm'
getLodColIndices(x, lodcolumns = NULL, strict = FALSE)

## S3 method for class 'scantwo'
getLodColIndices(x, lodcolumns = NULL, strict = FALSE)

## S3 method for class 'scantwoperm'
getLodColIndices(x, lodcolumns = NULL, strict = FALSE)

## S3 method for class 'summary.scanonebins'
getLodColIndices(x, lodcolumns = NULL,
  strict = FALSE)

## S3 method for class 'summary.scanoneperm'
getLodColIndices(x, lodcolumns = NULL,
  strict = FALSE)

## S3 method for class 'summary.scantwoperm'
getLodColIndices(x, lodcolumns = NULL,
  strict = FALSE)

Arguments

x	A scanone or equivalent object, or any object with LOD-column-associated elements.
lodcolumns	In a scanone or equivalent object, this parameter indicates which LOD columns to consider. In other objects with LOD-column-associated elements, this parameter indicates which of those LOD-column-associated elements to consider. The specified LOD columns must be a character vector of LOD column names, a logical vector with length equal to the number of LOD columns, or a numeric vector of indices with respect to the set of LOD columns. If no LOD columns are specified, all are used.
strict	Option indicating that the LOD columns, if specified, must be in the same order as the corresponding elements of the input object.

Value

Vector of LOD column indices.

gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.