makeMapFromLocusIDs: Make map from locus IDs.
In gact/shmootl: QTL Analysis Utilities for Yeast
Description
Usage
Arguments
Value
Map
Description
Make map from locus IDs.
Usage
1
makeMapFromLocusIDs(ids)
Arguments
ids
Vector of default marker IDs,
default QTL names, or pseudomarker IDs.
Value
An R/qtl map object. The returned object is a genetic
map if the input ids are default QTL names or pseudomarkers. A
physical map is returned if the input ids are default marker IDs.
Map
The R/qtl map object - described in detail in Section 2.6 of
Broman and Sen (2009) - comprises a nonempty list, each element of which
contains two or more marker positions for a given chromosome. Each list
element is named for its corresponding chromosome, while the names of each
chromosome's marker position vector comprise the marker locus IDs.
Within shmootl, a map must represent either a genetic or a
physical map. These are distinguished by the 'map.unit' attribute
of an object, which can contain either genetic or physical map units.
gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.
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Description Usage Arguments Value Map
Description
Make map from locus IDs.
Usage
1 | makeMapFromLocusIDs(ids)
|
Arguments
ids |
Vector of default marker IDs, default QTL names, or pseudomarker IDs. |
Value
An R/qtl map object. The returned object is a genetic
map if the input ids are default QTL names or pseudomarkers. A
physical map is returned if the input ids are default marker IDs.
Map
The R/qtl map object - described in detail in Section 2.6 of
Broman and Sen (2009) - comprises a nonempty list, each element of which
contains two or more marker positions for a given chromosome. Each list
element is named for its corresponding chromosome, while the names of each
chromosome's marker position vector comprise the marker locus IDs.
Within shmootl, a map must represent either a genetic or a
physical map. These are distinguished by the 'map.unit' attribute
of an object, which can contain either genetic or physical map units.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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