makeMapFromPseudomarkerIDs: Make map from pseudomarker IDs.

Description Usage Arguments Value Map

View source: R/map.R

Description

Make map from pseudomarker IDs.

Usage

1

Arguments

loc.ids

Vector of pseudomarker IDs.

Value

An R/qtl map object.

Map

The R/qtl map object - described in detail in Section 2.6 of Broman and Sen (2009) - comprises a nonempty list, each element of which contains two or more marker positions for a given chromosome. Each list element is named for its corresponding chromosome, while the names of each chromosome's marker position vector comprise the marker locus IDs.

Within shmootl, a map must represent either a genetic or a physical map. These are distinguished by the 'map.unit' attribute of an object, which can contain either genetic or physical map units.


gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.