makeScanoneThresholdObject: Make 'scanone' threshold object.
In gact/shmootl: QTL Analysis Utilities for Yeast
Description
Usage
Arguments
Value
Description
Make scanone threshold object.
Usage
1
2
makeScanoneThresholdObject(threshold, lodcolnames = "lod", alpha = NULL,
fdr = NULL)
Arguments
threshold
LOD threshold value.
lodcolnames
Character vector of LOD column names
to be used in the scanone threshold object.
alpha
Significance level (alpha) associated with the specified LOD
threshold. (Incompatible with fdr.)
fdr
False-discovery rate associated with the specified LOD
threshold. (Incompatible with alpha.)
Value
If alpha is specified, a summary.scanoneperm object is
returned, with the given threshold at the specified alpha for each LOD
column. If fdr is specified, a summary.scanonebins object is
returned, with the given threshold at the specified fdr in the single
LOD column for all phenotypes. In any case, because no permutations are used
in generating the threshold, the returned object has attribute 'n.perm'
containing the value 0.
gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.
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Description Usage Arguments Value
Description
Make scanone threshold object.
Usage
1 2 | makeScanoneThresholdObject(threshold, lodcolnames = "lod", alpha = NULL,
fdr = NULL)
|
Arguments
threshold |
LOD threshold value. |
lodcolnames |
Character vector of LOD column names
to be used in the |
alpha |
Significance level (alpha) associated with the specified LOD
threshold. (Incompatible with |
fdr |
False-discovery rate associated with the specified LOD
threshold. (Incompatible with |
Value
If alpha is specified, a summary.scanoneperm object is
returned, with the given threshold at the specified alpha for each LOD
column. If fdr is specified, a summary.scanonebins object is
returned, with the given threshold at the specified fdr in the single
LOD column for all phenotypes. In any case, because no permutations are used
in generating the threshold, the returned object has attribute 'n.perm'
containing the value 0.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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