writeDigestExcel: Write an Excel digest of QTL scan results.

Description Usage Arguments Author(s) See Also

View source: R/excel.R

Description

Write an Excel digest of QTL scan results.

Usage

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writeDigestExcel(scanfiles, digest, phenotypes = NULL, analyses = NULL,
  worksheets = NULL, scanfile.pattern = NULL)

Arguments

scanfiles

One or more QTL scan result HDF5 files.

digest

Path of output digest Excel file.

phenotypes

Phenotypes for which results should be included in the output file. If none are specified, results are output for all phenotypes.

analyses

Analyses for which results should be included in the output file. If none are specified, results are output for all available analyses.

worksheets

Worksheets to include in the output file. If none are specified, default worksheets are output. To view available worksheets, call the function listWorksheets.

scanfile.pattern

Pattern for extracting experiment info from scan file names. This must be a valid Perl regex with named capture groups. Neither the capture groups nor the pattern itself are required to match any given scan file, but all capture groups must have a name, and that name cannot clash with other names that might be used alongside the extracted information.

Author(s)

Thomas Walsh <tw164@protonmail.com>

Yue Hu

See Also

Other Excel functions: listWorksheets, writeReportExcel


gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.