writeReportExcel: Write an Excel report of QTL scan results.

Description Usage Arguments Author(s) See Also

View source: R/excel.R

Description

Write an Excel report of QTL scan results.

Usage

1
2
writeReportExcel(scanfile, report, phenotypes = NULL, analyses = NULL,
  worksheets = NULL, scanfile.pattern = NULL)

Arguments

scanfile

A QTL scan result HDF5 file.

report

Path of output report Excel file.

phenotypes

Phenotypes for which results should be included in the output file. If none are specified, results are output for all phenotypes.

analyses

Analyses for which results should be included in the output file. If none are specified, results are output for all available analyses.

worksheets

Worksheets to include in the output file. If none are specified, default worksheets are output. To view available worksheets, call the function listWorksheets.

scanfile.pattern

Pattern for extracting experiment info from scan file names. This must be a valid Perl regex with named capture groups. Neither the capture groups nor the pattern itself are required to match any given scan file, but all capture groups must have a name, and that name cannot clash with other names that might be used alongside the extracted information.

Author(s)

Yue Hu

Thomas Walsh <tw164@protonmail.com>

See Also

Other Excel functions: listWorksheets, writeDigestExcel


gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.