API for gamerino/TarSeqQC
TARgeted SEQuencing Experiment Quality Control

Global functions
#	Man page
Object	Man page
TEList	Man page
TarSeqQC-package	Man page
TargetExperiment	Man page Source code
TargetExperiment-class	Man page
TargetExperiment-methods	Man page
TargetExperimentList	Man page Source code
TargetExperimentList-class	Man page
TargetExperimentList-method	Man page
TargetExperimentList-methods	Man page
addStatSummSheet	Man page
addStatSummSheet,TargetExperiment-method	Man page
addStatSummSheet-methods	Man page
ampliPanel	Man page
ampliPanel2	Man page
biasExploration	Man page
biasExploration,TargetExperiment-method	Man page
biasExploration-methods	Man page
buildFeaturePanel	Man page
buildFeaturePanel,TargetExperiment-method	Man page
buildFeaturePanel-methods	Man page
buildReport	Man page
buildReport,TargetExperiment-method	Man page
buildReport-methods	Man page
checkBedFasta	Man page Source code
checkBedFasta-methods	Man page
getAttribute	Man page
getAttribute,TargetExperiment-method	Man page
getAttribute,TargetExperimentList-method	Man page
getAttribute-methods	Man page
getBamFile	Man page
getBamFile,TargetExperiment-method	Man page
getBamFile-methods	Man page
getBedFile	Man page
getBedFile,TargetExperiment-method	Man page
getBedFile,TargetExperimentList-method	Man page
getBedFile-methods	Man page
getFastaFile	Man page
getFastaFile,TargetExperiment-method	Man page
getFastaFile-methods	Man page
getFeature	Man page
getFeature,TargetExperiment-method	Man page
getFeature,TargetExperimentList-method	Man page
getFeature-methods	Man page
getFeaturePanel	Man page
getFeaturePanel,TargetExperiment-method	Man page
getFeaturePanel-methods	Man page
getGenePanel	Man page
getGenePanel,TargetExperiment-method	Man page
getGenePanel-methods	Man page
getLowCtsFeatures	Man page
getLowCtsFeatures,TargetExperiment-method	Man page
getLowCtsFeatures,TargetExperimentList-method	Man page
getLowCtsFeatures-methods	Man page
getOverlappedRegions	Man page
getOverlappedRegions,TargetExperiment-method	Man page
getPanels	Man page
getPanels,TargetExperimentList-method	Man page
getPileupP	Man page
getPileupP,TargetExperiment-method	Man page
getPileupP-methods	Man page
getRegion	Man page
getRegion,TargetExperiment-method	Man page
getRegion,TargetExperimentList-method	Man page
getRegion-methods	Man page
getScanBamP	Man page
getScanBamP,TargetExperiment-method	Man page
getScanBamP-methods	Man page
ggplotColours	Man page
ggplotColours,TargetExperiment-method	Man page
ggplotColours,TargetExperimentList-method	Man page
ggplotColours-methods	Man page
initialize	Man page
initialize,TargetExperiment-method	Man page
initialize,TargetExperimentList-method	Man page
myCounts	Man page
object	Man page
pileupCounts	Man page Source code
pileupCounts-methods	Man page
plot	Man page
plot,TargetExperiment	Man page
plot,TargetExperimentList	Man page
plot.TargetExperiment	Man page Source code
plot.TargetExperimentList	Man page Source code
plotAttrExpl	Man page
plotAttrExpl,TargetExperiment-method	Man page
plotAttrExpl,TargetExperimentList-method	Man page
plotAttrExpl-methods	Man page
plotAttrPerform	Man page
plotAttrPerform,TargetExperiment-method	Man page
plotAttrPerform-methods	Man page
plotFeatPerform	Man page
plotFeatPerform,TargetExperiment-method	Man page
plotFeatPerform-methods	Man page
plotFeature	Man page
plotFeature,TargetExperiment-method	Man page
plotFeature-methods	Man page
plotGeneAttrPerFeat	Man page
plotGeneAttrPerFeat,TargetExperiment-method	Man page
plotGeneAttrPerFeat-methods	Man page
plotGlobalAttrExpl	Man page
plotGlobalAttrExpl,TargetExperimentList-method	Man page
plotGlobalAttrExpl-methods	Man page
plotInOutFeatures	Man page
plotInOutFeatures,TargetExperiment-method	Man page
plotInOutFeatures,data.frame-method	Man page
plotMetaDataExpl	Man page
plotMetaDataExpl,TargetExperiment-method	Man page
plotMetaDataExpl-methods	Man page
plotNtdPercentage	Man page
plotNtdPercentage,TargetExperiment-method	Man page
plotNtdPercentage-methods	Man page
plotPoolPerformance	Man page
plotPoolPerformance,TargetExperimentList-method	Man page
plotPoolPerformance-methods	Man page
plotRegion	Man page
plotRegion,TargetExperiment-method	Man page
plotRegion-methods	Man page
print	Man page
print,TargetExperiment-method	Man page
print,TargetExperimentList-method	Man page
readFrequencies	Man page
readFrequencies,TargetExperiment-method	Man page
readFrequencies-methods	Man page
setAttribute<-	Man page
setAttribute<-,TargetExperiment,character-method	Man page
setAttribute<--methods	Man page
setBamFile<-	Man page
setBamFile<-,TargetExperiment,character-method	Man page
setBedFile<-	Man page
setBedFile<-,TargetExperiment,character-method	Man page
setBedFile<--methods	Man page
setFastaFile<-	Man page
setFastaFile<-,TargetExperiment,character-method	Man page
setFastaFile<--methods	Man page
setFeature<-	Man page
setFeature<-,TargetExperiment,character-method	Man page
setFeature<-,TargetExperimentList,character-method	Man page
setFeature<--methods	Man page
setFeaturePanel<-	Man page
setFeaturePanel<-,TargetExperiment,GRanges-method	Man page
setFeaturePanel<--methods	Man page
setGenePanel<-	Man page
setGenePanel<-,TargetExperiment,GRanges-method	Man page
setGenePanel<--methods	Man page
setPileupP<-	Man page
setPileupP<-,TargetExperiment,PileupParam-method	Man page
setPileupP<--methods	Man page
setScanBamP<-	Man page
setScanBamP<-,TargetExperiment,ScanBamParam-method	Man page
setScanBamP<--methods	Man page
setsetBamFile<-	Man page
setsetBamFile<--methods	Man page
show	Man page
show,TargetExperiment-method	Man page
show,TargetExperimentList-method	Man page
summarizePanel	Man page
summarizePanel,TargetExperiment-method	Man page
summarizePanel-methods	Man page
summary	Man page
summary(ampliPanel)	Man page
summary,TargetExperiment-method	Man page
summary,TargetExperimentList-method	Man page
summaryFeatureLev	Man page
summaryFeatureLev,TargetExperiment-method	Man page
summaryFeatureLev-methods	Man page
summaryGeneLev	Man page
summaryGeneLev,TargetExperiment-method	Man page
summaryGeneLev-methods	Man page
summaryIntervals	Man page
summaryIntervals,TargetExperiment-method	Man page
summaryIntervals,TargetExperimentList-method	Man page
summaryIntervals-methods	Man page