TargetExperiment-plotAttrPerform: Plot feature performance of a TargetExperiment object.

In gamerino/TarSeqQC: TARgeted SEQuencing Experiment Quality Control

Description

plotAttrPerform plots the achieved performance for the selected attribute. The resulting graph shows one bar per each attribute interval and its height is defined according to the number of features achieving attribute values within that interval.

Usage

plotAttrPerform(object, attributeThres = c(0, 1, 50, 200, 500, Inf))

## S4 method for signature 'TargetExperiment'
plotAttrPerform(object, attributeThres = c(0, 1,
    50, 200, 500, Inf))

Arguments

object	TargetExperiment class object.
attributeThres	Numeric indicating the intervals extreme values.

Value

ggplot2 graphics

Note

see full example in TargetExperiment-class

Author(s)

Gabriela A. Merino [e-mail], Cristobal Fresno [e-mail], Yanina Murua [e-mail], Andrea S. Llera [e-mail] and Elmer A. Fernandez [e-mail]

See Also

plot

Examples

## Loading the TargetExperiment object
data(ampliPanel, package="TarSeqQC")

# Definition of the interval extreme values
attributeThres<-c(0,1,50,200,500, Inf)

# Plot panel overview in a feature performance plot
g<-plotAttrPerform(ampliPanel, attributeThres=attributeThres)
if(interactive()){
g
}

gamerino/TarSeqQC documentation built on Feb. 3, 2020, 9:19 p.m.