TEList: A set of two amplicon panels example for use the TarSeqQC R...
In gamerino/TarSeqQC: TARgeted SEQuencing Experiment Quality Control
Description
Format
Details
Author(s)
Source
See Also
Description
A non-real dataset containing amplicon sequencing results to test the TarSeqQC
package, principally the use of the TargetExperimentList class.
Format
A TargetExperimentList object
Details
- bedFile
Bed file containing 29 amplicons and 8 genes.
- panels
GRanges obtaining amplicon coverage for two targeted sequencing
experiment performed using the same bed file
- feature
Character "amplicon" indicating that the analyzed features
are amplicon sequences
- attribute
Character "coverage"
Author(s)
Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno
cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar,
Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez
efernandez@bdmg.com.ar
Source
see TargetExperimentList-class
See Also
Other TargetExperimentList: TargetExperimentList-class,
TargetExperimentList,
initialize,TargetExperimentList-method
gamerino/TarSeqQC documentation built on Feb. 3, 2020, 9:19 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Format Details Author(s) Source See Also
Description
A non-real dataset containing amplicon sequencing results to test the TarSeqQC package, principally the use of the TargetExperimentList class.
Format
A TargetExperimentList object
Details
- bedFile
Bed file containing 29 amplicons and 8 genes.
- panels
GRanges obtaining amplicon coverage for two targeted sequencing experiment performed using the same bed file
- feature
Character "amplicon" indicating that the analyzed features are amplicon sequences
- attribute
Character "coverage"
Author(s)
Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar
Source
see TargetExperimentList-class
See Also
Other TargetExperimentList: TargetExperimentList-class,
TargetExperimentList,
initialize,TargetExperimentList-method
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.