TargetExperimentList-initialize: TargetExperimentList object constructor.

Description Usage Arguments Value Note Author(s) See Also Examples

Description

initialize creates the TargetExperimentList object containing the experiment results of several targeted sequencing experiments carried out using a unique bed file.

Usage

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## S4 method for signature 'TargetExperimentList'
initialize(.Object, TEList, feature = NULL,
    attribute = "coverage")

Arguments

.Object

TargetExperimentList class.

TEList

List containing all the TargetExperiment objects corresponding to the experiments that will be compared.

feature

Character indicating the name of the feature that will be explored (e.g 'amplicon', 'exon', 'gene').

attribute

Character indicating the name of the attribute that will be explored. Should be 'coverage' or 'medianCounts'.

Value

TargetExperimentList object.

Note

see full example in TargetExperimentList-class

Author(s)

Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar

See Also

TargetExperimentList

Other TargetExperimentList: TargetExperimentList-class, TargetExperimentList, object

Examples

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# Defining the set of TargetExperiment objects
data(ampliPanel, package="TarSeqQC")
data(ampliPanel2, package="TarSeqQC")
ampliList<-list(ampliPanel, ampliPanel2)
# Defining feature parameter
feature<-"amplicon"
# Defining attribute parameter
attribute<-"coverage"
##Calling the constructor
object<-TargetExperimentList(TEList=ampliList, attribute=attribute,
    feature=feature)

gamerino/TarSeqQC documentation built on Feb. 3, 2020, 9:19 p.m.